RNA–Protein interactions for RNA: ENST00000302085.8

SMAD1-201, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD1, Length 1,966 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-201ENST00000302085 APLP2Q06481 763 aa34.49■■■■□ 3.11
SMAD1-201ENST00000302085 CTTNBP2Q8WZ74 1663 aa34.49■■■■□ 3.11
SMAD1-201ENST00000302085 ADAMTS12P58397 1594 aa34.44■■■■□ 3.1
SMAD1-201ENST00000302085 HRCP23327 699 aa34.43■■■■□ 3.1
SMAD1-201ENST00000302085 EIF4G3O43432 1585 aaKnown RBP34.4■■■■□ 3.1
SMAD1-201ENST00000302085 P3H3Q8IVL6 736 aa34.35■■■■□ 3.09
SMAD1-201ENST00000302085 EFCAB5A4FU69 1503 aa34.33■■■■□ 3.09
SMAD1-201ENST00000302085 SNAPC4Q5SXM2 1469 aa34.3■■■■□ 3.08
SMAD1-201ENST00000302085 FHOD3Q2V2M9 1422 aa34.26■■■■□ 3.08
SMAD1-201ENST00000302085 KANK4Q5T7N3 995 aaPredicted RBP34.24■■■■□ 3.07
SMAD1-201ENST00000302085 SAMD9Q5K651 1589 aa34.19■■■■□ 3.06
SMAD1-201ENST00000302085 MAGI1Q96QZ7 1491 aaPredicted RBP34.19■■■■□ 3.06
SMAD1-201ENST00000302085 GRIN2AQ12879 1464 aa34.13■■■■□ 3.05
SMAD1-201ENST00000302085 IQGAP2Q13576 1575 aa34.12■■■■□ 3.05
SMAD1-201ENST00000302085 MAP3K1Q13233 1512 aa34.12■■■■□ 3.05
SMAD1-201ENST00000302085 PCF11O94913 1555 aaKnown RBP34.11■■■■□ 3.05
SMAD1-201ENST00000302085 SYNJ2O15056 1496 aa34.08■■■■□ 3.05
SMAD1-201ENST00000302085 TIAM1Q13009 1591 aa34.07■■■■□ 3.04
SMAD1-201ENST00000302085 FMN1Q68DA7 1419 aa34.07■■■■□ 3.04
SMAD1-201ENST00000302085 CASKIN1Q8WXD9 1431 aa34.07■■■■□ 3.04
SMAD1-201ENST00000302085 CHMP7Q8WUX9 453 aaPredicted RBP34.05■■■■□ 3.04
SMAD1-201ENST00000302085 KIAA0586Q9BVV6 1533 aa34.04■■■■□ 3.04
SMAD1-201ENST00000302085 FYCO1Q9BQS8 1478 aa34.03■■■■□ 3.04
SMAD1-201ENST00000302085 ATP1B4Q9UN42 357 aaPredicted RBP34■■■■□ 3.03
SMAD1-201ENST00000302085 UGGT2Q9NYU1 1516 aa33.98■■■■□ 3.03
SMAD1-201ENST00000302085 FBLN2P98095 1184 aa33.96■■■■□ 3.03
SMAD1-201ENST00000302085 LRRC9Q6ZRR7 1453 aa33.94■■■■□ 3.02
SMAD1-201ENST00000302085 CFAP43Q8NDM7 1665 aa33.94■■■■□ 3.02
SMAD1-201ENST00000302085 CEP170Q5SW79 1584 aa33.92■■■■□ 3.02
SMAD1-201ENST00000302085 NUP160Q12769 1436 aa33.87■■■■□ 3.01
SMAD1-201ENST00000302085 HNRNPUL2Q1KMD3 747 aaKnown RBP33.85■■■■□ 3.01
SMAD1-201ENST00000302085 DISP1Q96F81 1524 aa33.83■■■■□ 3.01
SMAD1-201ENST00000302085 RRBP1Q9P2E9 1410 aaKnown RBP33.83■■■■□ 3.01
SMAD1-201ENST00000302085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.81■■■■□ 3
SMAD1-201ENST00000302085 ZEB1P37275 1124 aaPredicted RBP33.8■■■■□ 3
SMAD1-201ENST00000302085 KIAA0556O60303 1618 aa33.78■■■■□ 3
SMAD1-201ENST00000302085 LRRIQ1Q96JM4 1722 aa33.77■■■■□ 3
SMAD1-201ENST00000302085 CCNB3Q8WWL7 1395 aa33.71■■■□□ 2.99
SMAD1-201ENST00000302085 JPH4Q96JJ6 628 aa33.71■■■□□ 2.99
SMAD1-201ENST00000302085 PHLDB1Q86UU1 1377 aa33.7■■■□□ 2.98
SMAD1-201ENST00000302085 CCER1Q8TC90 406 aaPredicted RBP33.69■■■□□ 2.98
SMAD1-201ENST00000302085 HECW1Q76N89 1606 aa33.65■■■□□ 2.98
SMAD1-201ENST00000302085 MTUS2Q5JR59 1369 aa33.62■■■□□ 2.97
SMAD1-201ENST00000302085 CCDC18Q5T9S5 1454 aa33.62■■■□□ 2.97
SMAD1-201ENST00000302085 CHD1O14646 1710 aa33.61■■■□□ 2.97
SMAD1-201ENST00000302085 EPRSP07814 1512 aaKnown RBP33.58■■■□□ 2.97
SMAD1-201ENST00000302085 CARMIL2Q6F5E8 1435 aa33.58■■■□□ 2.97
SMAD1-201ENST00000302085 MAGI3Q5TCQ9 1506 aa33.52■■■□□ 2.96
SMAD1-201ENST00000302085 CDK13Q14004 1512 aaKnown RBP33.5■■■□□ 2.95
SMAD1-201ENST00000302085 EHBP1L1Q8N3D4 1523 aa33.5■■■□□ 2.95
SMAD1-201ENST00000302085 RAPGEF6Q8TEU7 1601 aa33.49■■■□□ 2.95
SMAD1-201ENST00000302085 ARID3CA6NKF2 412 aa33.47■■■□□ 2.95
SMAD1-201ENST00000302085 NUP153P49790 1475 aaKnown RBP33.47■■■□□ 2.95
SMAD1-201ENST00000302085 NCOA2Q15596 1464 aa33.46■■■□□ 2.95
SMAD1-201ENST00000302085 ITGAEP38570 1179 aa33.43■■■□□ 2.94
SMAD1-201ENST00000302085 SUPT6HQ7KZ85 1726 aaKnown RBP33.43■■■□□ 2.94
SMAD1-201ENST00000302085 PRG4Q92954 1404 aaPredicted RBP33.43■■■□□ 2.94
SMAD1-201ENST00000302085 FAM50AQ14320 339 aaKnown RBP33.42■■■□□ 2.94
SMAD1-201ENST00000302085 PLB1Q6P1J6 1458 aa33.41■■■□□ 2.94
SMAD1-201ENST00000302085 ARHGEF11O15085 1522 aa33.39■■■□□ 2.94
SMAD1-201ENST00000302085 FGD6Q6ZV73 1430 aa33.39■■■□□ 2.94
SMAD1-201ENST00000302085 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.38■■■□□ 2.93
SMAD1-201ENST00000302085 MYOM3Q5VTT5 1437 aa33.35■■■□□ 2.93
SMAD1-201ENST00000302085 SHROOM2Q13796 1616 aa33.33■■■□□ 2.93
SMAD1-201ENST00000302085 ABCA8O94911 1581 aa33.3■■■□□ 2.92
SMAD1-201ENST00000302085 PTPRGP23470 1445 aa33.26■■■□□ 2.91
SMAD1-201ENST00000302085 CDK11AQ9UQ88 783 aaPredicted RBP33.25■■■□□ 2.91
SMAD1-201ENST00000302085 CLASP1Q7Z460 1538 aa33.23■■■□□ 2.91
SMAD1-201ENST00000302085 ERCC6L2Q5T890 1561 aa33.16■■■□□ 2.9
SMAD1-201ENST00000302085 DHX57Q6P158 1386 aaKnown RBP33.16■■■□□ 2.9
SMAD1-201ENST00000302085 PTPN23Q9H3S7 1636 aa33.16■■■□□ 2.9
SMAD1-201ENST00000302085 TROQ12816 1431 aaPredicted RBP33.16■■■□□ 2.9
SMAD1-201ENST00000302085 SETD5Q9C0A6 1442 aa33.16■■■□□ 2.9
SMAD1-201ENST00000302085 RAB3GAP2Q9H2M9 1393 aa33.15■■■□□ 2.9
SMAD1-201ENST00000302085 ATP10BO94823 1461 aa33.14■■■□□ 2.9
SMAD1-201ENST00000302085 TCOF1Q13428 1488 aaKnown RBP33.12■■■□□ 2.89
SMAD1-201ENST00000302085 MIA2Q96PC5 1412 aa33.11■■■□□ 2.89
SMAD1-201ENST00000302085 PTPRKQ15262 1439 aa33.1■■■□□ 2.89
SMAD1-201ENST00000302085 UACAQ9BZF9 1416 aa33.06■■■□□ 2.88
SMAD1-201ENST00000302085 PLEKHD1A6NEE1 506 aa33.04■■■□□ 2.88
SMAD1-201ENST00000302085 CLSPNQ9HAW4 1339 aa33.02■■■□□ 2.88
SMAD1-201ENST00000302085 ADCY10Q96PN6 1610 aa33.02■■■□□ 2.88
SMAD1-201ENST00000302085 KIF14Q15058 1648 aa32.99■■■□□ 2.87
SMAD1-201ENST00000302085 HFM1A2PYH4 1435 aa32.92■■■□□ 2.86
SMAD1-201ENST00000302085 GPATCH8Q9UKJ3 1502 aaKnown RBP32.92■■■□□ 2.86
SMAD1-201ENST00000302085 ABCC2Q92887 1545 aa32.91■■■□□ 2.86
SMAD1-201ENST00000302085 ZNF644Q9H582 1327 aaPredicted RBP32.9■■■□□ 2.86
SMAD1-201ENST00000302085 ABCC10Q5T3U5 1492 aa32.87■■■□□ 2.85
SMAD1-201ENST00000302085 NAIPQ13075 1403 aa32.87■■■□□ 2.85
SMAD1-201ENST00000302085 CFDP1Q9UEE9 299 aaPredicted RBP32.87■■■□□ 2.85
SMAD1-201ENST00000302085 ITSN2Q9NZM3 1697 aa32.85■■■□□ 2.85
SMAD1-201ENST00000302085 CHIC2Q9UKJ5 165 aa32.85■■■□□ 2.85
SMAD1-201ENST00000302085 OSCARQ8IYS5 282 aa32.83■■■□□ 2.85
SMAD1-201ENST00000302085 UHRF1BP1LA0JNW5 1464 aa32.81■■■□□ 2.84
SMAD1-201ENST00000302085 DAPK1P53355 1430 aa32.8■■■□□ 2.84
SMAD1-201ENST00000302085 ABCC5O15440 1437 aa32.79■■■□□ 2.84
SMAD1-201ENST00000302085 MAPKBP1O60336 1514 aa32.79■■■□□ 2.84
SMAD1-201ENST00000302085 RRP7BPQ9NSQ0 103 aa32.79■■■□□ 2.84
SMAD1-201ENST00000302085 CAMSAP2Q08AD1 1489 aa32.78■■■□□ 2.84
SMAD1-201ENST00000302085 DNMT1P26358 1616 aaKnown RBP32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms