RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 EFCAB5A4FU69 1503 aa25.52■■□□□ 1.68
CCDC40-201ENST00000269318 ZNF608Q9ULD9 1512 aaPredicted RBP25.5■■□□□ 1.67
CCDC40-201ENST00000269318 GRIN2BQ13224 1484 aa25.5■■□□□ 1.67
CCDC40-201ENST00000269318 FHAD1B1AJZ9 1412 aa25.48■■□□□ 1.67
CCDC40-201ENST00000269318 ADAMTS12P58397 1594 aa25.48■■□□□ 1.67
CCDC40-201ENST00000269318 KANK4Q5T7N3 995 aaPredicted RBP25.44■■□□□ 1.66
CCDC40-201ENST00000269318 ZEB1P37275 1124 aaPredicted RBP25.43■■□□□ 1.66
CCDC40-201ENST00000269318 MAP3K1Q13233 1512 aa25.43■■□□□ 1.66
CCDC40-201ENST00000269318 FHOD3Q2V2M9 1422 aa25.41■■□□□ 1.66
CCDC40-201ENST00000269318 SAMD9Q5K651 1589 aa25.39■■□□□ 1.66
CCDC40-201ENST00000269318 EIF4G3O43432 1585 aaKnown RBP25.39■■□□□ 1.65
CCDC40-201ENST00000269318 PCF11O94913 1555 aaKnown RBP25.37■■□□□ 1.65
CCDC40-201ENST00000269318 TIAM1Q13009 1591 aa25.37■■□□□ 1.65
CCDC40-201ENST00000269318 P3H3Q8IVL6 736 aa25.37■■□□□ 1.65
CCDC40-201ENST00000269318 FYCO1Q9BQS8 1478 aa25.31■■□□□ 1.64
CCDC40-201ENST00000269318 SNAPC4Q5SXM2 1469 aa25.31■■□□□ 1.64
CCDC40-201ENST00000269318 CASKIN1Q8WXD9 1431 aa25.3■■□□□ 1.64
CCDC40-201ENST00000269318 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.29■■□□□ 1.64
CCDC40-201ENST00000269318 CFAP43Q8NDM7 1665 aa25.29■■□□□ 1.64
CCDC40-201ENST00000269318 FMN1Q68DA7 1419 aa25.29■■□□□ 1.64
CCDC40-201ENST00000269318 IQGAP2Q13576 1575 aa25.27■■□□□ 1.64
CCDC40-201ENST00000269318 LRRC9Q6ZRR7 1453 aa25.26■■□□□ 1.63
CCDC40-201ENST00000269318 RRBP1Q9P2E9 1410 aaKnown RBP25.25■■□□□ 1.63
CCDC40-201ENST00000269318 MAGI1Q96QZ7 1491 aaPredicted RBP25.23■■□□□ 1.63
CCDC40-201ENST00000269318 GRIN2AQ12879 1464 aa25.21■■□□□ 1.63
CCDC40-201ENST00000269318 HNRNPUL2Q1KMD3 747 aaKnown RBP25.2■■□□□ 1.63
CCDC40-201ENST00000269318 CCER1Q8TC90 406 aaPredicted RBP25.2■■□□□ 1.63
CCDC40-201ENST00000269318 UGGT2Q9NYU1 1516 aa25.17■■□□□ 1.62
CCDC40-201ENST00000269318 KIAA0586Q9BVV6 1533 aa25.16■■□□□ 1.62
CCDC40-201ENST00000269318 SYNJ2O15056 1496 aa25.15■■□□□ 1.62
CCDC40-201ENST00000269318 CCNB3Q8WWL7 1395 aa25.13■■□□□ 1.61
CCDC40-201ENST00000269318 ATP1B4Q9UN42 357 aaPredicted RBP25.11■■□□□ 1.61
CCDC40-201ENST00000269318 LRRIQ1Q96JM4 1722 aa25.09■■□□□ 1.61
CCDC40-201ENST00000269318 PHLDB1Q86UU1 1377 aa25.07■■□□□ 1.6
CCDC40-201ENST00000269318 CEP170Q5SW79 1584 aa25.05■■□□□ 1.6
CCDC40-201ENST00000269318 CHMP7Q8WUX9 453 aaPredicted RBP25.04■■□□□ 1.6
CCDC40-201ENST00000269318 DISP1Q96F81 1524 aa25.03■■□□□ 1.6
CCDC40-201ENST00000269318 KIAA0556O60303 1618 aa25.02■■□□□ 1.6
CCDC40-201ENST00000269318 NUP160Q12769 1436 aa25.02■■□□□ 1.6
CCDC40-201ENST00000269318 HECW1Q76N89 1606 aa24.98■■□□□ 1.59
CCDC40-201ENST00000269318 CCDC18Q5T9S5 1454 aa24.97■■□□□ 1.59
CCDC40-201ENST00000269318 MTUS2Q5JR59 1369 aa24.94■■□□□ 1.58
CCDC40-201ENST00000269318 FBLN2P98095 1184 aa24.93■■□□□ 1.58
CCDC40-201ENST00000269318 EHBP1L1Q8N3D4 1523 aa24.92■■□□□ 1.58
CCDC40-201ENST00000269318 EPRSP07814 1512 aaKnown RBP24.91■■□□□ 1.58
CCDC40-201ENST00000269318 MAGI3Q5TCQ9 1506 aa24.89■■□□□ 1.58
CCDC40-201ENST00000269318 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.88■■□□□ 1.57
CCDC40-201ENST00000269318 NCOA2Q15596 1464 aa24.86■■□□□ 1.57
CCDC40-201ENST00000269318 SUPT6HQ7KZ85 1726 aaKnown RBP24.86■■□□□ 1.57
CCDC40-201ENST00000269318 ARHGEF11O15085 1522 aa24.84■■□□□ 1.57
CCDC40-201ENST00000269318 FGD6Q6ZV73 1430 aa24.84■■□□□ 1.57
CCDC40-201ENST00000269318 CDK13Q14004 1512 aaKnown RBP24.83■■□□□ 1.57
CCDC40-201ENST00000269318 JPH4Q96JJ6 628 aa24.82■■□□□ 1.56
CCDC40-201ENST00000269318 ITGAEP38570 1179 aa24.82■■□□□ 1.56
CCDC40-201ENST00000269318 RAPGEF6Q8TEU7 1601 aa24.81■■□□□ 1.56
CCDC40-201ENST00000269318 FAM50AQ14320 339 aaKnown RBP24.8■■□□□ 1.56
CCDC40-201ENST00000269318 NUP153P49790 1475 aaKnown RBP24.8■■□□□ 1.56
CCDC40-201ENST00000269318 DHX57Q6P158 1386 aaKnown RBP24.79■■□□□ 1.56
CCDC40-201ENST00000269318 MYOM3Q5VTT5 1437 aa24.79■■□□□ 1.56
CCDC40-201ENST00000269318 CARMIL2Q6F5E8 1435 aa24.79■■□□□ 1.56
CCDC40-201ENST00000269318 CHD1O14646 1710 aa24.76■■□□□ 1.55
CCDC40-201ENST00000269318 CLSPNQ9HAW4 1339 aa24.74■■□□□ 1.55
CCDC40-201ENST00000269318 RAB3GAP2Q9H2M9 1393 aa24.72■■□□□ 1.55
CCDC40-201ENST00000269318 SETD5Q9C0A6 1442 aa24.71■■□□□ 1.55
CCDC40-201ENST00000269318 PLB1Q6P1J6 1458 aa24.7■■□□□ 1.55
CCDC40-201ENST00000269318 ARID3CA6NKF2 412 aa24.68■■□□□ 1.54
CCDC40-201ENST00000269318 PTPN23Q9H3S7 1636 aa24.67■■□□□ 1.54
CCDC40-201ENST00000269318 TCOF1Q13428 1488 aaKnown RBP24.65■■□□□ 1.54
CCDC40-201ENST00000269318 ABCA8O94911 1581 aa24.64■■□□□ 1.53
CCDC40-201ENST00000269318 PRG4Q92954 1404 aaPredicted RBP24.63■■□□□ 1.53
CCDC40-201ENST00000269318 PTPRKQ15262 1439 aa24.62■■□□□ 1.53
CCDC40-201ENST00000269318 SHROOM2Q13796 1616 aa24.62■■□□□ 1.53
CCDC40-201ENST00000269318 MIA2Q96PC5 1412 aa24.61■■□□□ 1.53
CCDC40-201ENST00000269318 CDK11AQ9UQ88 783 aaPredicted RBP24.58■■□□□ 1.53
CCDC40-201ENST00000269318 TROQ12816 1431 aaPredicted RBP24.57■■□□□ 1.52
CCDC40-201ENST00000269318 HFM1A2PYH4 1435 aa24.54■■□□□ 1.52
CCDC40-201ENST00000269318 MAPKBP1O60336 1514 aa24.54■■□□□ 1.52
CCDC40-201ENST00000269318 ADCY10Q96PN6 1610 aa24.52■■□□□ 1.52
CCDC40-201ENST00000269318 PTPRGP23470 1445 aa24.51■■□□□ 1.51
CCDC40-201ENST00000269318 ATP10BO94823 1461 aa24.49■■□□□ 1.51
CCDC40-201ENST00000269318 CLASP1Q7Z460 1538 aa24.49■■□□□ 1.51
CCDC40-201ENST00000269318 NAIPQ13075 1403 aa24.47■■□□□ 1.51
CCDC40-201ENST00000269318 KIF14Q15058 1648 aa24.46■■□□□ 1.51
CCDC40-201ENST00000269318 ERCC6L2Q5T890 1561 aa24.44■■□□□ 1.5
CCDC40-201ENST00000269318 AKNAQ7Z591 1439 aa24.43■■□□□ 1.5
CCDC40-201ENST00000269318 ITSN2Q9NZM3 1697 aa24.41■■□□□ 1.5
CCDC40-201ENST00000269318 GPATCH8Q9UKJ3 1502 aaKnown RBP24.41■■□□□ 1.5
CCDC40-201ENST00000269318 UACAQ9BZF9 1416 aa24.39■■□□□ 1.5
CCDC40-201ENST00000269318 GCC2Q8IWJ2 1684 aa24.39■■□□□ 1.49
CCDC40-201ENST00000269318 DNMT1P26358 1616 aaKnown RBP24.38■■□□□ 1.49
CCDC40-201ENST00000269318 PLEKHD1A6NEE1 506 aa24.38■■□□□ 1.49
CCDC40-201ENST00000269318 ZNF316A6NFI3 1004 aaPredicted RBP24.37■■□□□ 1.49
CCDC40-201ENST00000269318 DAPK1P53355 1430 aa24.36■■□□□ 1.49
CCDC40-201ENST00000269318 ABCC10Q5T3U5 1492 aa24.36■■□□□ 1.49
CCDC40-201ENST00000269318 ZNF644Q9H582 1327 aaPredicted RBP24.35■■□□□ 1.49
CCDC40-201ENST00000269318 ABCC5O15440 1437 aa24.35■■□□□ 1.49
CCDC40-201ENST00000269318 CAMSAP2Q08AD1 1489 aa24.33■■□□□ 1.49
CCDC40-201ENST00000269318 CHIC2Q9UKJ5 165 aa24.33■■□□□ 1.48
CCDC40-201ENST00000269318 ABCC2Q92887 1545 aa24.32■■□□□ 1.48
CCDC40-201ENST00000269318 CFDP1Q9UEE9 299 aaPredicted RBP24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms