RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 NISCHQ9Y2I1 1504 aa36.93■■■■□ 3.5
CCDC40-201ENST00000269318 CCDC180Q9P1Z9 1646 aa31.98■■■□□ 2.71
CCDC40-201ENST00000269318 ZCCHC6Q5VYS8 1495 aaKnown RBP31.11■■■□□ 2.57
CCDC40-201ENST00000269318 DCAF1Q9Y4B6 1507 aa30.52■■■□□ 2.48
CCDC40-201ENST00000269318 SHROOM4Q9ULL8 1493 aa30.41■■■□□ 2.46
CCDC40-201ENST00000269318 DCAF8L2P0C7V8 631 aa30.34■■■□□ 2.45
CCDC40-201ENST00000269318 MYO15BQ96JP2 1530 aa30.01■■■□□ 2.39
CCDC40-201ENST00000269318 ABCC9O60706 1549 aa29.95■■■□□ 2.39
CCDC40-201ENST00000269318 NACADO15069 1562 aa29.7■■■□□ 2.34
CCDC40-201ENST00000269318 SCRIBQ14160 1630 aa29.51■■■□□ 2.31
CCDC40-201ENST00000269318 SUPT5HO00267 1087 aaKnown RBP29.42■■■□□ 2.3
CCDC40-201ENST00000269318 RB1CC1Q8TDY2 1594 aa29.35■■■□□ 2.29
CCDC40-201ENST00000269318 UNC13AQ9UPW8 1703 aa28.82■■■□□ 2.2
CCDC40-201ENST00000269318 RSF1Q96T23 1441 aaPredicted RBP28.82■■■□□ 2.2
CCDC40-201ENST00000269318 CECR2Q9BXF3 1484 aa28.71■■■□□ 2.19
CCDC40-201ENST00000269318 MROH2BQ7Z745 1585 aa28.57■■■□□ 2.16
CCDC40-201ENST00000269318 BICRAQ9NZM4 1560 aa28.53■■■□□ 2.16
CCDC40-201ENST00000269318 BAZ1AQ9NRL2 1556 aaPredicted RBP28.46■■■□□ 2.15
CCDC40-201ENST00000269318 CHIC1Q5VXU3 224 aa28.39■■■□□ 2.13
CCDC40-201ENST00000269318 WIZO95785 1651 aa28.35■■■□□ 2.13
CCDC40-201ENST00000269318 PABPN1Q86U42 306 aaKnown RBP eCLIP28.34■■■□□ 2.13
CCDC40-201ENST00000269318 SMARCA4P51532 1647 aa28.3■■■□□ 2.12
CCDC40-201ENST00000269318 TOP2AP11388 1531 aaKnown RBP28.04■■■□□ 2.08
CCDC40-201ENST00000269318 PEG3Q9GZU2 1588 aa27.95■■■□□ 2.06
CCDC40-201ENST00000269318 SMARCA2P51531 1590 aa27.81■■■□□ 2.04
CCDC40-201ENST00000269318 CCDC88BA6NC98 1476 aa27.78■■■□□ 2.04
CCDC40-201ENST00000269318 EIF4G1Q04637 1599 aaKnown RBP27.77■■■□□ 2.04
CCDC40-201ENST00000269318 ATAD2BQ9ULI0 1458 aa27.76■■■□□ 2.03
CCDC40-201ENST00000269318 TRIM41Q8WV44 630 aa27.61■■■□□ 2.01
CCDC40-201ENST00000269318 BAZ1BQ9UIG0 1483 aaKnown RBP27.59■■■□□ 2.01
CCDC40-201ENST00000269318 NCAPD3P42695 1498 aa27.44■■□□□ 1.98
CCDC40-201ENST00000269318 HMGXB3Q12766 1538 aa27.42■■□□□ 1.98
CCDC40-201ENST00000269318 LOC105371045A0A1W2PR82 267 aa27.33■■□□□ 1.97
CCDC40-201ENST00000269318 ABCC8Q09428 1581 aa27.33■■□□□ 1.97
CCDC40-201ENST00000269318 FAM9AQ8IZU1 332 aaPredicted RBP27.15■■□□□ 1.94
CCDC40-201ENST00000269318 CC2D2AQ9P2K1 1620 aa27.11■■□□□ 1.93
CCDC40-201ENST00000269318 WRNQ14191 1432 aaPredicted RBP eCLIP27.08■■□□□ 1.93
CCDC40-201ENST00000269318 SYNJ1O43426 1573 aa26.99■■□□□ 1.91
CCDC40-201ENST00000269318 CFTRP13569 1480 aa26.95■■□□□ 1.9
CCDC40-201ENST00000269318 SOGA1O94964 1423 aa26.91■■□□□ 1.9
CCDC40-201ENST00000269318 EEA1Q15075 1411 aa26.86■■□□□ 1.89
CCDC40-201ENST00000269318 TOP2BQ02880 1626 aa26.83■■□□□ 1.88
CCDC40-201ENST00000269318 RUSC2Q8N2Y8 1516 aa26.8■■□□□ 1.88
CCDC40-201ENST00000269318 BIVM-ERCC5R4GMW8 1640 aa26.79■■□□□ 1.88
CCDC40-201ENST00000269318 PRDM2Q13029 1718 aa26.78■■□□□ 1.88
CCDC40-201ENST00000269318 CADPSQ9ULU8 1353 aa26.76■■□□□ 1.88
CCDC40-201ENST00000269318 EHMT2Q96KQ7 1210 aa26.75■■□□□ 1.87
CCDC40-201ENST00000269318 CSRNP3Q8WYN3 585 aa26.7■■□□□ 1.86
CCDC40-201ENST00000269318 CUX1P39880 1505 aa26.68■■□□□ 1.86
CCDC40-201ENST00000269318 TNIKQ9UKE5 1360 aa26.52■■□□□ 1.84
CCDC40-201ENST00000269318 GOLGA3Q08378 1498 aa26.52■■□□□ 1.84
CCDC40-201ENST00000269318 KIF21BO75037 1637 aa26.52■■□□□ 1.84
CCDC40-201ENST00000269318 CEP164Q9UPV0 1460 aa26.49■■□□□ 1.83
CCDC40-201ENST00000269318 FANCD2Q9BXW9 1451 aa26.47■■□□□ 1.83
CCDC40-201ENST00000269318 PCGF6Q9BYE7 350 aa26.44■■□□□ 1.82
CCDC40-201ENST00000269318 NESP48681 1621 aa26.44■■□□□ 1.82
CCDC40-201ENST00000269318 CEP162Q5TB80 1403 aa26.43■■□□□ 1.82
CCDC40-201ENST00000269318 LAMC3Q9Y6N6 1575 aa26.42■■□□□ 1.82
CCDC40-201ENST00000269318 DNAJC5BQ9UF47 199 aa26.4■■□□□ 1.82
CCDC40-201ENST00000269318 UBTFP17480 764 aaKnown RBP26.37■■□□□ 1.81
CCDC40-201ENST00000269318 KIF27Q86VH2 1401 aa26.35■■□□□ 1.81
CCDC40-201ENST00000269318 RAPGEF2Q9Y4G8 1499 aa26.33■■□□□ 1.81
CCDC40-201ENST00000269318 TRIM26Q12899 539 aaPredicted RBP26.33■■□□□ 1.81
CCDC40-201ENST00000269318 FGD5Q6ZNL6 1462 aa26.32■■□□□ 1.8
CCDC40-201ENST00000269318 PRXQ9BXM0 1461 aa26.31■■□□□ 1.8
CCDC40-201ENST00000269318 DNMBPQ6XZF7 1577 aa26.29■■□□□ 1.8
CCDC40-201ENST00000269318 ERICH3Q5RHP9 1530 aa26.27■■□□□ 1.8
CCDC40-201ENST00000269318 TOPBP1Q92547 1522 aa26.23■■□□□ 1.79
CCDC40-201ENST00000269318 CUX2O14529 1486 aa26.21■■□□□ 1.79
CCDC40-201ENST00000269318 PDS5BQ9NTI5 1447 aa26.19■■□□□ 1.78
CCDC40-201ENST00000269318 URB2Q14146 1524 aaKnown RBP26.14■■□□□ 1.78
CCDC40-201ENST00000269318 POLA1P09884 1462 aaPredicted RBP26.14■■□□□ 1.78
CCDC40-201ENST00000269318 CLIP1P30622 1438 aa26.13■■□□□ 1.77
CCDC40-201ENST00000269318 IGF1RP08069 1367 aa26.11■■□□□ 1.77
CCDC40-201ENST00000269318 KIF21AQ7Z4S6 1674 aa26.09■■□□□ 1.77
CCDC40-201ENST00000269318 ABCA10Q8WWZ4 1543 aa26.09■■□□□ 1.77
CCDC40-201ENST00000269318 RAD54L2Q9Y4B4 1467 aa26.07■■□□□ 1.76
CCDC40-201ENST00000269318 HRCP23327 699 aa26■■□□□ 1.75
CCDC40-201ENST00000269318 PPARGC1BQ86YN6 1023 aaKnown RBP26■■□□□ 1.75
CCDC40-201ENST00000269318 WDR97A6NE52 1622 aa25.97■■□□□ 1.75
CCDC40-201ENST00000269318 CARMIL1Q5VZK9 1371 aa25.96■■□□□ 1.75
CCDC40-201ENST00000269318 VPS8Q8N3P4 1428 aa25.96■■□□□ 1.75
CCDC40-201ENST00000269318 MRC2Q9UBG0 1479 aa25.86■■□□□ 1.73
CCDC40-201ENST00000269318 RANGAP1P46060 587 aaPredicted RBP25.86■■□□□ 1.73
CCDC40-201ENST00000269318 ARAP1Q96P48 1450 aa25.85■■□□□ 1.73
CCDC40-201ENST00000269318 ABCA5Q8WWZ7 1642 aa25.85■■□□□ 1.73
CCDC40-201ENST00000269318 CUL7Q14999 1698 aa25.83■■□□□ 1.73
CCDC40-201ENST00000269318 TARBP1Q13395 1621 aaKnown RBP25.82■■□□□ 1.72
CCDC40-201ENST00000269318 ARHGAP35Q9NRY4 1499 aa25.78■■□□□ 1.72
CCDC40-201ENST00000269318 TDRD9Q8NDG6 1382 aaKnown RBP25.77■■□□□ 1.72
CCDC40-201ENST00000269318 GAPVD1Q14C86 1478 aa25.76■■□□□ 1.72
CCDC40-201ENST00000269318 WDR62O43379 1518 aa25.72■■□□□ 1.71
CCDC40-201ENST00000269318 TTBK1Q5TCY1 1321 aaPredicted RBP25.71■■□□□ 1.71
CCDC40-201ENST00000269318 APLP2Q06481 763 aa25.62■■□□□ 1.69
CCDC40-201ENST00000269318 CTTNBP2Q8WZ74 1663 aa25.6■■□□□ 1.69
CCDC40-201ENST00000269318 IFT140Q96RY7 1462 aa25.6■■□□□ 1.69
CCDC40-201ENST00000269318 ERCC6Q03468 1493 aa25.59■■□□□ 1.69
CCDC40-201ENST00000269318 PBRM1Q86U86 1689 aa25.58■■□□□ 1.69
CCDC40-201ENST00000269318 THOC2Q8NI27 1593 aaKnown RBP25.57■■□□□ 1.68
CCDC40-201ENST00000269318 AQRO60306 1485 aaKnown RBP eCLIP25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms