RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W FIS1P40515 155 aa15.59■□□□□ 0.09
DEP1YAL013W SEC5P89102 971 aa15.59■□□□□ 0.09
DEP1YAL013W EBS1Q03466 884 aaKnown RBP15.59■□□□□ 0.09
DEP1YAL013W TLG2Q08144 397 aa15.59■□□□□ 0.09
DEP1YAL013W SRD1P09007 221 aa15.58■□□□□ 0.08
DEP1YAL013W PFK1P16861 987 aaKnown RBP15.58■□□□□ 0.08
DEP1YAL013W HUL4P40985 892 aa15.58■□□□□ 0.08
DEP1YAL013W SPR3P41901 512 aa15.58■□□□□ 0.08
DEP1YAL013W YDL057WQ07379 328 aa15.58■□□□□ 0.08
DEP1YAL013W YOL075CQ08234 1294 aa15.58■□□□□ 0.08
DEP1YAL013W TCO89Q08921 799 aa15.58■□□□□ 0.08
DEP1YAL013W TY3A-GQ12173 290 aa15.58■□□□□ 0.08
DEP1YAL013W TY3A-IQ99219 290 aa15.58■□□□□ 0.08
DEP1YAL013W MRC1P25588 1096 aa15.57■□□□□ 0.08
DEP1YAL013W PSO2P30620 661 aa15.57■□□□□ 0.08
DEP1YAL013W SEC8P32855 1065 aa15.57■□□□□ 0.08
DEP1YAL013W YET1P35723 206 aa15.57■□□□□ 0.08
DEP1YAL013W REG2P38232 338 aa15.57■□□□□ 0.08
DEP1YAL013W ULP2P40537 1034 aaPredicted RBP15.57■□□□□ 0.08
DEP1YAL013W DUS4Q06063 367 aa15.57■□□□□ 0.08
DEP1YAL013W YKL091CP33324 310 aaKnown RBP15.56■□□□□ 0.08
DEP1YAL013W EBP2P36049 427 aaKnown RBP15.56■□□□□ 0.08
DEP1YAL013W PPS1P38148 807 aa15.56■□□□□ 0.08
DEP1YAL013W CDC37P06101 506 aaKnown RBP15.55■□□□□ 0.08
DEP1YAL013W PGM2P37012 569 aaKnown RBP15.55■□□□□ 0.08
DEP1YAL013W RSC30P38781 883 aa15.55■□□□□ 0.08
DEP1YAL013W BIM1P40013 344 aa15.55■□□□□ 0.08
DEP1YAL013W ZPR1P53303 486 aaKnown RBP15.55■□□□□ 0.08
DEP1YAL013W SLD5Q03406 294 aa15.55■□□□□ 0.08
DEP1YAL013W CRD1Q07560 283 aa15.55■□□□□ 0.08
DEP1YAL013W PHO13P19881 312 aa15.54■□□□□ 0.08
DEP1YAL013W HMF1P40037 129 aaKnown RBP15.54■□□□□ 0.08
DEP1YAL013W VPS75P53853 264 aa15.54■□□□□ 0.08
DEP1YAL013W YMR321CQ04898 105 aa15.54■□□□□ 0.08
DEP1YAL013W ECM29P38737 1868 aa15.53■□□□□ 0.08
DEP1YAL013W SHM1P37292 490 aaPredicted RBP15.53■□□□□ 0.08
DEP1YAL013W STR2P47164 639 aa15.53■□□□□ 0.08
DEP1YAL013W YPL216WQ08964 1102 aa15.53■□□□□ 0.08
DEP1YAL013W MAK16P10962 306 aaPredicted RBP15.52■□□□□ 0.08
DEP1YAL013W OM45P16547 393 aa15.52■□□□□ 0.08
DEP1YAL013W TFC4P33339 1025 aa15.52■□□□□ 0.08
DEP1YAL013W CTM1P38818 585 aa15.52■□□□□ 0.08
DEP1YAL013W NBP1P52919 319 aaPredicted RBP15.52■□□□□ 0.08
DEP1YAL013W ARK1P53974 638 aa15.52■□□□□ 0.08
DEP1YAL013W COG4Q06096 861 aa15.52■□□□□ 0.08
DEP1YAL013W CUR1Q06469 252 aa15.52■□□□□ 0.08
DEP1YAL013W YAP7Q08182 245 aa15.52■□□□□ 0.08
DEP1YAL013W TCP1P12612 559 aaKnown RBP15.51■□□□□ 0.07
DEP1YAL013W CYC8P14922 966 aa15.51■□□□□ 0.07
DEP1YAL013W SPO11P23179 398 aa15.51■□□□□ 0.07
DEP1YAL013W SAP190P36123 1033 aa15.51■□□□□ 0.07
DEP1YAL013W TVP38P36164 337 aa15.51■□□□□ 0.07
DEP1YAL013W UBP5P39944 805 aa15.51■□□□□ 0.07
DEP1YAL013W YFL034WP43564 1073 aa15.51■□□□□ 0.07
DEP1YAL013W UBP15P50101 1230 aa15.51■□□□□ 0.07
DEP1YAL013W YPL277CQ08989 487 aa15.51■□□□□ 0.07
DEP1YAL013W PCK1P10963 549 aa15.5■□□□□ 0.07
DEP1YAL013W MIP6P38760 659 aaKnown RBP15.5■□□□□ 0.07
DEP1YAL013W RPN3P40016 523 aaKnown RBP15.5■□□□□ 0.07
DEP1YAL013W HUL5P53119 910 aa15.5■□□□□ 0.07
DEP1YAL013W TIF6Q12522 245 aaKnown RBP15.5■□□□□ 0.07
DEP1YAL013W PDC1P06169 563 aaKnown RBP15.49■□□□□ 0.07
DEP1YAL013W YUR1P26725 428 aa15.49■□□□□ 0.07
DEP1YAL013W TRK2P28584 889 aa15.49■□□□□ 0.07
DEP1YAL013W MXR1P40029 184 aa15.49■□□□□ 0.07
DEP1YAL013W MGA2P40578 1113 aa15.49■□□□□ 0.07
DEP1YAL013W YLR225CQ05948 407 aaKnown RBP15.49■□□□□ 0.07
DEP1YAL013W RPS6AP0CX37 236 aaKnown RBP15.48■□□□□ 0.07
DEP1YAL013W RPS6BP0CX38 236 aaPredicted RBP15.48■□□□□ 0.07
DEP1YAL013W DAL7P21826 554 aa15.48■□□□□ 0.07
DEP1YAL013W RGT1P32862 1170 aa15.48■□□□□ 0.07
DEP1YAL013W TOS3P43637 560 aa15.48■□□□□ 0.07
DEP1YAL013W VID30P53076 958 aa15.48■□□□□ 0.07
DEP1YAL013W NCS2P53923 493 aaPredicted RBP15.48■□□□□ 0.07
DEP1YAL013W MSH3P25336 1018 aa15.47■□□□□ 0.07
DEP1YAL013W YEL1P34225 687 aa15.47■□□□□ 0.07
DEP1YAL013W CAF130P53280 1122 aaPredicted RBP15.47■□□□□ 0.07
DEP1YAL013W ROD1Q02805 837 aa15.47■□□□□ 0.07
DEP1YAL013W MED1Q12321 566 aa15.47■□□□□ 0.07
DEP1YAL013W TRM11Q12463 433 aa15.47■□□□□ 0.07
DEP1YAL013W SEC65P29478 273 aa15.46■□□□□ 0.07
DEP1YAL013W HFM1P51979 1187 aa15.46■□□□□ 0.07
DEP1YAL013W TOF1P53840 1238 aa15.46■□□□□ 0.07
DEP1YAL013W MSC6Q08818 692 aaKnown RBP15.46■□□□□ 0.07
DEP1YAL013W EFM2P38347 419 aa15.45■□□□□ 0.06
DEP1YAL013W YEL025CP39991 1188 aa15.45■□□□□ 0.06
DEP1YAL013W FYV8P46949 817 aaKnown RBP15.45■□□□□ 0.06
DEP1YAL013W SCS3P53012 380 aa15.45■□□□□ 0.06
DEP1YAL013W PRE10P21242 288 aaKnown RBP RIP-Chip data15.44■□□□□ 0.06not detected
DEP1YAL013W YSC83P32792 385 aa15.44■□□□□ 0.06
DEP1YAL013W RPC25P35718 212 aa15.44■□□□□ 0.06
DEP1YAL013W SPT8P38915 602 aa15.44■□□□□ 0.06
DEP1YAL013W ATG1P53104 897 aa15.44■□□□□ 0.06
DEP1YAL013W NCR1Q12200 1170 aa15.44■□□□□ 0.06
DEP1YAL013W RPC53P25441 422 aa15.43■□□□□ 0.06
DEP1YAL013W MRF1P30775 413 aaPredicted RBP15.43■□□□□ 0.06
DEP1YAL013W RME1P32338 300 aaKnown RBP15.43■□□□□ 0.06
DEP1YAL013W SPC110P32380 944 aa15.43■□□□□ 0.06
DEP1YAL013W UBP13P38187 747 aa15.43■□□□□ 0.06
DEP1YAL013W RTT107P38850 1070 aa15.43■□□□□ 0.06
Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms