Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 NSR1YGR159C 1245 nt22.28■■□□□ 1.16
MSH3P25336 YML009W-BYML009W-B 477 nt22.08■■□□□ 1.13
MSH3P25336 NOP1YDL014W 984 nt21.35■■□□□ 1.01
MSH3P25336 MDJ1YFL016C 1536 nt20.03■□□□□ 0.8
MSH3P25336 YKL036CYKL036C 393 nt19.42■□□□□ 0.7
MSH3P25336 SRX1YKL086W 384 nt18.69■□□□□ 0.58
MSH3P25336 Q0297Q0297 156 nt18.64■□□□□ 0.57
MSH3P25336 YJL027CYJL027C 417 nt18.45■□□□□ 0.54
MSH3P25336 DBP2YNL112W 1641 nt17.66■□□□□ 0.42
MSH3P25336 YCR051WYCR051W 669 nt17.65■□□□□ 0.42
MSH3P25336 SCS3YGL126W 1143 nt17.51■□□□□ 0.39
MSH3P25336 YBR190WYBR190W 312 nt17.19■□□□□ 0.34
MSH3P25336 TRN1tP(UGG)A 72 nt17.09■□□□□ 0.33
MSH3P25336 SUF9tP(UGG)F 72 nt17.09■□□□□ 0.33
MSH3P25336 SUF8tP(UGG)H 72 nt17.09■□□□□ 0.33
MSH3P25336 tP(UGG)LtP(UGG)L 72 nt17.09■□□□□ 0.33
MSH3P25336 SUF7tP(UGG)M 72 nt17.09■□□□□ 0.33
MSH3P25336 tP(UGG)N1tP(UGG)N1 72 nt17.09■□□□□ 0.33
MSH3P25336 tP(UGG)N2tP(UGG)N2 72 nt17.09■□□□□ 0.33
MSH3P25336 tP(UGG)O1tP(UGG)O1 72 nt17.09■□□□□ 0.33
MSH3P25336 SUF11tP(UGG)O2 72 nt17.09■□□□□ 0.33
MSH3P25336 CCC1YLR220W 969 nt16.86■□□□□ 0.29
MSH3P25336 YOL085CYOL085C 342 nt16.86■□□□□ 0.29
MSH3P25336 SSA3YBL075C 1950 nt16.85■□□□□ 0.29
MSH3P25336 RTC3YHR087W 336 nt16.73■□□□□ 0.27
MSH3P25336 RPP1BYDL130W 321 nt16.7■□□□□ 0.26
MSH3P25336 PKP1YIL042C 1185 nt16.6■□□□□ 0.25
MSH3P25336 RVS167YDR388W 1449 nt16.45■□□□□ 0.22
MSH3P25336 SCJ1YMR214W 1134 nt16.34■□□□□ 0.21
MSH3P25336 tP(UGG)O3tP(UGG)O3 72 nt16.06■□□□□ 0.16
MSH3P25336 PET122YER153C 765 nt15.99■□□□□ 0.15
MSH3P25336 PUT4YOR348C 1884 nt15.87■□□□□ 0.13
MSH3P25336 SHR5YOL110W 714 nt15.84■□□□□ 0.13
MSH3P25336 SCR1SCR1 522 nt15.7■□□□□ 0.1
MSH3P25336 ATS1YAL020C 1002 nt15.59■□□□□ 0.09
MSH3P25336 URN1YPR152C 1398 nt15.59■□□□□ 0.09
MSH3P25336 YDJ1YNL064C 1230 nt15.55■□□□□ 0.08
MSH3P25336 RRN5YLR141W 1092 nt15.51■□□□□ 0.07
MSH3P25336 ARE1YCR048W 1833 nt15.49■□□□□ 0.07
MSH3P25336 DEP1YAL013W 1218 nt15.47■□□□□ 0.07
MSH3P25336 OPI9YLR338W 858 nt15.44■□□□□ 0.06
MSH3P25336 SAH1YER043C 1350 nt15.42■□□□□ 0.06
MSH3P25336 POA1YBR022W 534 nt15.33■□□□□ 0.04
MSH3P25336 YHR049C-AYHR049C-A 297 nt15.24■□□□□ 0.03
MSH3P25336 RPN10YHR200W 807 nt15.24■□□□□ 0.03
MSH3P25336 GAR1YHR089C 618 nt15.21■□□□□ 0.03
MSH3P25336 YNL208WYNL208W 600 nt15.21■□□□□ 0.03
MSH3P25336 YER088W-BYER088W-B 147 nt15.2■□□□□ 0.02
MSH3P25336 RSB1YOR049C 1065 nt15.05■□□□□ -0
MSH3P25336 BSC6YOL137W 1494 nt15.05■□□□□ -0
MSH3P25336 PUN1YLR414C 792 nt14.97□□□□□ -0.01
MSH3P25336 YJR018WYJR018W 363 nt14.86□□□□□ -0.03
MSH3P25336 PTC2YER089C 1395 nt14.85□□□□□ -0.03
MSH3P25336 BUD23YCR047C 828 nt14.84□□□□□ -0.03
MSH3P25336 TIR1YER011W 765 nt14.74□□□□□ -0.05
MSH3P25336 NAB2YGL122C 1578 nt14.7□□□□□ -0.06
MSH3P25336 SPT5YML010W 3192 nt14.69□□□□□ -0.06
MSH3P25336 SSA1YAL005C 1929 nt14.64□□□□□ -0.07
MSH3P25336 YJR120WYJR120W 351 nt14.61□□□□□ -0.07
MSH3P25336 PST2YDR032C 597 nt14.53□□□□□ -0.08
MSH3P25336 FIS1YIL065C 468 nt14.47□□□□□ -0.09
MSH3P25336 DAL1YIR027C 1383 nt14.45□□□□□ -0.1
MSH3P25336 RPP2BYDR382W 333 nt14.44□□□□□ -0.1
MSH3P25336 SSA4YER103W 1929 nt14.41□□□□□ -0.1
MSH3P25336 INM2YDR287W 879 nt14.37□□□□□ -0.11
MSH3P25336 SRB2YHR041C 633 nt14.36□□□□□ -0.11
MSH3P25336 FPR4YLR449W 1179 nt14.35□□□□□ -0.11
MSH3P25336 PHO4YFR034C 939 nt14.31□□□□□ -0.12
MSH3P25336 MEP2YNL142W 1500 nt14.18□□□□□ -0.14
MSH3P25336 PAC11YDR488C 1602 nt14.18□□□□□ -0.14
MSH3P25336 YPS1YLR120C 1710 nt14.16□□□□□ -0.14
MSH3P25336 YBL100CYBL100C 315 nt14.16□□□□□ -0.14
MSH3P25336 BDH2YAL061W 1254 nt14.14□□□□□ -0.15
MSH3P25336 BDF1YLR399C 2061 nt14.08□□□□□ -0.15
MSH3P25336 NVJ2YPR091C 2313 nt14.06□□□□□ -0.16
MSH3P25336 WWM1YFL010C 636 nt14.04□□□□□ -0.16
MSH3P25336 YDR095CYDR095C 411 nt14.02□□□□□ -0.17
MSH3P25336 FUN26YAL022C 1554 nt14□□□□□ -0.17
MSH3P25336 SHU1YHL006C 453 nt13.99□□□□□ -0.17
MSH3P25336 YHR165W-AYHR165W-A 312 nt13.98□□□□□ -0.17
MSH3P25336 DCW1YKL046C 1350 nt13.95□□□□□ -0.18
MSH3P25336 LSM3YLR438C-A 270 nt13.91□□□□□ -0.18
MSH3P25336 TRM9YML014W 840 nt13.91□□□□□ -0.18
MSH3P25336 Q0182Q0182 405 nt13.88□□□□□ -0.19
MSH3P25336 YAL037C-BYAL037C-B 975 nt13.85□□□□□ -0.19
MSH3P25336 YGR021WYGR021W 873 nt13.84□□□□□ -0.19
MSH3P25336 TAT1YBR069C 1860 nt13.84□□□□□ -0.19
MSH3P25336 ALF1YNL148C 765 nt13.82□□□□□ -0.2
MSH3P25336 YFL021C-AYFL021C-A 855 nt13.81□□□□□ -0.2
MSH3P25336 HOM6YJR139C 1080 nt13.81□□□□□ -0.2
MSH3P25336 CCT6YDR188W 1641 nt13.81□□□□□ -0.2
MSH3P25336 PTP1YDL230W 1008 nt13.77□□□□□ -0.21
MSH3P25336 EMI2YDR516C 1503 nt13.75□□□□□ -0.21
MSH3P25336 RPP2AYOL039W 321 nt13.75□□□□□ -0.21
MSH3P25336 YKL097CYKL097C 411 nt13.72□□□□□ -0.21
MSH3P25336 CAC2YML102W 1407 nt13.71□□□□□ -0.22
MSH3P25336 SIS1YNL007C 1059 nt13.7□□□□□ -0.22
MSH3P25336 SUF2tP(AGG)C 72 nt13.68□□□□□ -0.22
MSH3P25336 SUF10tP(AGG)N 72 nt13.68□□□□□ -0.22
MSH3P25336 MNP1YGL068W 585 nt13.66□□□□□ -0.22
Retrieved 100 of 7,029 protein–RNA pairs in 14.1 ms