Protein–RNA interactions for Protein: P09007

SRD1, Pre-rRNA-processing protein SRD1, yeastyeast

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SRD1P09007 YML009W-BYML009W-B 477 nt22.76■■□□□ 1.23
SRD1P09007 NSR1YGR159C 1245 nt22.51■■□□□ 1.19
SRD1P09007 NOP1YDL014W 984 nt22.15■■□□□ 1.14
SRD1P09007 YKL036CYKL036C 393 nt20.54■□□□□ 0.88
SRD1P09007 MDJ1YFL016C 1536 nt19.91■□□□□ 0.78
SRD1P09007 Q0297Q0297 156 nt19.42■□□□□ 0.7
SRD1P09007 SRX1YKL086W 384 nt19.36■□□□□ 0.69
SRD1P09007 YJL027CYJL027C 417 nt19.2■□□□□ 0.66
SRD1P09007 SCS3YGL126W 1143 nt18.75■□□□□ 0.59
SRD1P09007 YCR051WYCR051W 669 nt18.39■□□□□ 0.53
SRD1P09007 YOL085CYOL085C 342 nt17.79■□□□□ 0.44
SRD1P09007 DBP2YNL112W 1641 nt17.64■□□□□ 0.41
SRD1P09007 PKP1YIL042C 1185 nt17.53■□□□□ 0.4
SRD1P09007 TRN1tP(UGG)A 72 nt17.45■□□□□ 0.38
SRD1P09007 SUF9tP(UGG)F 72 nt17.45■□□□□ 0.38
SRD1P09007 SUF8tP(UGG)H 72 nt17.45■□□□□ 0.38
SRD1P09007 tP(UGG)LtP(UGG)L 72 nt17.45■□□□□ 0.38
SRD1P09007 SUF7tP(UGG)M 72 nt17.45■□□□□ 0.38
SRD1P09007 tP(UGG)N1tP(UGG)N1 72 nt17.45■□□□□ 0.38
SRD1P09007 tP(UGG)N2tP(UGG)N2 72 nt17.45■□□□□ 0.38
SRD1P09007 tP(UGG)O1tP(UGG)O1 72 nt17.45■□□□□ 0.38
SRD1P09007 SUF11tP(UGG)O2 72 nt17.45■□□□□ 0.38
SRD1P09007 RPP1BYDL130W 321 nt17.43■□□□□ 0.38
SRD1P09007 CCC1YLR220W 969 nt17.28■□□□□ 0.36
SRD1P09007 YBR190WYBR190W 312 nt16.93■□□□□ 0.3
SRD1P09007 ATS1YAL020C 1002 nt16.79■□□□□ 0.28
SRD1P09007 SCJ1YMR214W 1134 nt16.71■□□□□ 0.27
SRD1P09007 PET122YER153C 765 nt16.66■□□□□ 0.26
SRD1P09007 RVS167YDR388W 1449 nt16.62■□□□□ 0.25
SRD1P09007 RTC3YHR087W 336 nt16.58■□□□□ 0.24
SRD1P09007 tP(UGG)O3tP(UGG)O3 72 nt16.54■□□□□ 0.24
SRD1P09007 SCR1SCR1 522 nt16.5■□□□□ 0.23
SRD1P09007 RRN5YLR141W 1092 nt16.19■□□□□ 0.18
SRD1P09007 SHR5YOL110W 714 nt16.06■□□□□ 0.16
SRD1P09007 YDJ1YNL064C 1230 nt16■□□□□ 0.15
SRD1P09007 RSB1YOR049C 1065 nt15.88■□□□□ 0.13
SRD1P09007 YER088W-BYER088W-B 147 nt15.86■□□□□ 0.13
SRD1P09007 GAR1YHR089C 618 nt15.63■□□□□ 0.09
SRD1P09007 DEP1YAL013W 1218 nt15.58■□□□□ 0.08
SRD1P09007 URN1YPR152C 1398 nt15.55■□□□□ 0.08
SRD1P09007 PST2YDR032C 597 nt15.53■□□□□ 0.08
SRD1P09007 RPN10YHR200W 807 nt15.35■□□□□ 0.05
SRD1P09007 YNL208WYNL208W 600 nt15.34■□□□□ 0.05
SRD1P09007 OPI9YLR338W 858 nt15.3■□□□□ 0.04
SRD1P09007 PUT4YOR348C 1884 nt15.28■□□□□ 0.04
SRD1P09007 SAH1YER043C 1350 nt15.18■□□□□ 0.02
SRD1P09007 TIR1YER011W 765 nt15.1■□□□□ 0.01
SRD1P09007 ARE1YCR048W 1833 nt15.05■□□□□ -0
SRD1P09007 YKL097CYKL097C 411 nt14.98□□□□□ -0.01
SRD1P09007 SSA1YAL005C 1929 nt14.89□□□□□ -0.03
SRD1P09007 SHU1YHL006C 453 nt14.88□□□□□ -0.03
SRD1P09007 YHR049C-AYHR049C-A 297 nt14.87□□□□□ -0.03
SRD1P09007 PUN1YLR414C 792 nt14.86□□□□□ -0.03
SRD1P09007 YJR018WYJR018W 363 nt14.84□□□□□ -0.03
SRD1P09007 POA1YBR022W 534 nt14.83□□□□□ -0.04
SRD1P09007 SRB2YHR041C 633 nt14.67□□□□□ -0.06
SRD1P09007 PTC2YER089C 1395 nt14.66□□□□□ -0.06
SRD1P09007 YJR120WYJR120W 351 nt14.64□□□□□ -0.07
SRD1P09007 YAL037C-BYAL037C-B 975 nt14.63□□□□□ -0.07
SRD1P09007 RPP2BYDR382W 333 nt14.58□□□□□ -0.08
SRD1P09007 BUD23YCR047C 828 nt14.54□□□□□ -0.08
SRD1P09007 BSC6YOL137W 1494 nt14.49□□□□□ -0.09
SRD1P09007 WWM1YFL010C 636 nt14.46□□□□□ -0.09
SRD1P09007 NAB2YGL122C 1578 nt14.44□□□□□ -0.1
SRD1P09007 YGR021WYGR021W 873 nt14.39□□□□□ -0.11
SRD1P09007 YOR139CYOR139C 393 nt14.36□□□□□ -0.11
SRD1P09007 HOM6YJR139C 1080 nt14.35□□□□□ -0.11
SRD1P09007 MNP1YGL068W 585 nt14.32□□□□□ -0.12
SRD1P09007 BDH2YAL061W 1254 nt14.3□□□□□ -0.12
SRD1P09007 INM2YDR287W 879 nt14.29□□□□□ -0.12
SRD1P09007 DAL1YIR027C 1383 nt14.28□□□□□ -0.12
SRD1P09007 FIS1YIL065C 468 nt14.27□□□□□ -0.13
SRD1P09007 FPR4YLR449W 1179 nt14.27□□□□□ -0.13
SRD1P09007 SSA3YBL075C 1950 nt14.22□□□□□ -0.13
SRD1P09007 NPL3YDR432W 1245 nt14.22□□□□□ -0.13
SRD1P09007 YFL021C-AYFL021C-A 855 nt14.22□□□□□ -0.13
SRD1P09007 YBL100CYBL100C 315 nt14.19□□□□□ -0.14
SRD1P09007 PHO4YFR034C 939 nt14.15□□□□□ -0.14
SRD1P09007 RKM5YLR137W 1104 nt14.15□□□□□ -0.14
SRD1P09007 LSM3YLR438C-A 270 nt14.12□□□□□ -0.15
SRD1P09007 YOL037CYOL037C 354 nt14.11□□□□□ -0.15
SRD1P09007 FUN26YAL022C 1554 nt14.02□□□□□ -0.16
SRD1P09007 TRM9YML014W 840 nt14.01□□□□□ -0.17
SRD1P09007 CCT6YDR188W 1641 nt13.85□□□□□ -0.19
SRD1P09007 Q0182Q0182 405 nt13.84□□□□□ -0.19
SRD1P09007 YPS1YLR120C 1710 nt13.82□□□□□ -0.2
SRD1P09007 ALF1YNL148C 765 nt13.81□□□□□ -0.2
SRD1P09007 tM(CAU)CtM(CAU)C 72 nt13.79□□□□□ -0.2
SRD1P09007 IMT4tM(CAU)E 72 nt13.79□□□□□ -0.2
SRD1P09007 IMT3tM(CAU)J3 72 nt13.79□□□□□ -0.2
SRD1P09007 IMT1tM(CAU)O1 72 nt13.79□□□□□ -0.2
SRD1P09007 IMT2tM(CAU)P 72 nt13.79□□□□□ -0.2
SRD1P09007 YDR095CYDR095C 411 nt13.77□□□□□ -0.21
SRD1P09007 YLR281CYLR281C 468 nt13.76□□□□□ -0.21
SRD1P09007 SUF2tP(AGG)C 72 nt13.74□□□□□ -0.21
SRD1P09007 SUF10tP(AGG)N 72 nt13.74□□□□□ -0.21
SRD1P09007 WHI5YOR083W 888 nt13.72□□□□□ -0.21
SRD1P09007 PUS2YGL063W 1113 nt13.68□□□□□ -0.22
SRD1P09007 YHR165W-AYHR165W-A 312 nt13.68□□□□□ -0.22
SRD1P09007 SPT5YML010W 3192 nt13.65□□□□□ -0.22
Retrieved 100 of 7,029 protein–RNA pairs in 16.6 ms