Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRFN1Q9P244 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRFN1Q9P244 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
LRFN1Q9P244 ST7-205ENST00000393446 2114 ntTSL 5 BASIC23.39■■□□□ 1.34
LRFN1Q9P244 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.34
LRFN1Q9P244 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LRFN1Q9P244 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRFN1Q9P244 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LRFN1Q9P244 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRFN1Q9P244 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
LRFN1Q9P244 GPX1-201ENST00000419349 1106 ntBASIC23.38■■□□□ 1.33
LRFN1Q9P244 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.38■■□□□ 1.33
LRFN1Q9P244 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.38■■□□□ 1.33
LRFN1Q9P244 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC23.38■■□□□ 1.33
LRFN1Q9P244 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.37■■□□□ 1.33
LRFN1Q9P244 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRFN1Q9P244 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRFN1Q9P244 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.36■■□□□ 1.33
LRFN1Q9P244 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.36■■□□□ 1.33
LRFN1Q9P244 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.36■■□□□ 1.33
LRFN1Q9P244 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRFN1Q9P244 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRFN1Q9P244 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRFN1Q9P244 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRFN1Q9P244 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.35■■□□□ 1.33
LRFN1Q9P244 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
LRFN1Q9P244 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRFN1Q9P244 ST7-202ENST00000323984 2142 ntTSL 5 BASIC23.35■■□□□ 1.33
LRFN1Q9P244 ST7-207ENST00000393449 2127 ntTSL 5 BASIC23.35■■□□□ 1.33
LRFN1Q9P244 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.35■■□□□ 1.33
LRFN1Q9P244 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
LRFN1Q9P244 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
LRFN1Q9P244 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.34■■□□□ 1.33
LRFN1Q9P244 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.34■■□□□ 1.33
LRFN1Q9P244 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
LRFN1Q9P244 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRFN1Q9P244 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.33■■□□□ 1.33
LRFN1Q9P244 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRFN1Q9P244 AC148477.6-201ENST00000623746 465 ntBASIC23.33■■□□□ 1.33
LRFN1Q9P244 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LRFN1Q9P244 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
LRFN1Q9P244 AC022413.1-201ENST00000624602 984 ntBASIC23.31■■□□□ 1.32
LRFN1Q9P244 AC100797.4-201ENST00000631653 1827 ntBASIC23.31■■□□□ 1.32
LRFN1Q9P244 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRFN1Q9P244 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LRFN1Q9P244 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.3■■□□□ 1.32
LRFN1Q9P244 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LRFN1Q9P244 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LRFN1Q9P244 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.29■■□□□ 1.32
LRFN1Q9P244 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LRFN1Q9P244 RARRES2P2-201ENST00000394842 485 ntBASIC23.28■■□□□ 1.32
LRFN1Q9P244 MIR219A2-201ENST00000608502 1504 ntBASIC23.28■■□□□ 1.32
LRFN1Q9P244 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.27■■□□□ 1.32
LRFN1Q9P244 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRFN1Q9P244 AL139393.2-201ENST00000608721 2025 ntBASIC23.27■■□□□ 1.32
LRFN1Q9P244 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
LRFN1Q9P244 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
LRFN1Q9P244 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC23.27■■□□□ 1.32
LRFN1Q9P244 RNF126P1-201ENST00000567452 1320 ntBASIC23.27■■□□□ 1.32
LRFN1Q9P244 ABCB10P1-201ENST00000614297 2181 ntBASIC23.27■■□□□ 1.32
LRFN1Q9P244 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.27■■□□□ 1.31
LRFN1Q9P244 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LRFN1Q9P244 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LRFN1Q9P244 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
LRFN1Q9P244 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRFN1Q9P244 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRFN1Q9P244 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.25■■□□□ 1.31
LRFN1Q9P244 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRFN1Q9P244 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LRFN1Q9P244 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
LRFN1Q9P244 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.24■■□□□ 1.31
LRFN1Q9P244 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
LRFN1Q9P244 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.23■■□□□ 1.31
LRFN1Q9P244 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.23■■□□□ 1.31
LRFN1Q9P244 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.23■■□□□ 1.31
LRFN1Q9P244 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
LRFN1Q9P244 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRFN1Q9P244 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRFN1Q9P244 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.23■■□□□ 1.31
LRFN1Q9P244 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRFN1Q9P244 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LRFN1Q9P244 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRFN1Q9P244 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LRFN1Q9P244 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRFN1Q9P244 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LRFN1Q9P244 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.21■■□□□ 1.31
LRFN1Q9P244 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LRFN1Q9P244 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.21■■□□□ 1.31
LRFN1Q9P244 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
LRFN1Q9P244 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LRFN1Q9P244 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
LRFN1Q9P244 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRFN1Q9P244 ABCB10P3-201ENST00000561950 2166 ntBASIC23.2■■□□□ 1.3
LRFN1Q9P244 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRFN1Q9P244 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
LRFN1Q9P244 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.19■■□□□ 1.3
LRFN1Q9P244 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.19■■□□□ 1.3
LRFN1Q9P244 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.19■■□□□ 1.3
LRFN1Q9P244 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
LRFN1Q9P244 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms