Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
USP42Q9H9J4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC32.76■■■□□ 2.83
USP42Q9H9J4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
USP42Q9H9J4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC32.75■■■□□ 2.83
USP42Q9H9J4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC32.74■■■□□ 2.83
USP42Q9H9J4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC32.73■■■□□ 2.83
USP42Q9H9J4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
USP42Q9H9J4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC32.73■■■□□ 2.83
USP42Q9H9J4 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC32.72■■■□□ 2.83
USP42Q9H9J4 AC110285.7-201ENST00000624417 1536 ntBASIC32.72■■■□□ 2.83
USP42Q9H9J4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC32.71■■■□□ 2.83
USP42Q9H9J4 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
USP42Q9H9J4 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC32.7■■■□□ 2.83
USP42Q9H9J4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.82
USP42Q9H9J4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC32.69■■■□□ 2.82
USP42Q9H9J4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
USP42Q9H9J4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC32.68■■■□□ 2.82
USP42Q9H9J4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
USP42Q9H9J4 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
USP42Q9H9J4 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
USP42Q9H9J4 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.66■■■□□ 2.82
USP42Q9H9J4 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
USP42Q9H9J4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC32.65■■■□□ 2.82
USP42Q9H9J4 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC32.65■■■□□ 2.82
USP42Q9H9J4 GFER-205ENST00000569451 517 ntTSL 5 BASIC32.64■■■□□ 2.82
USP42Q9H9J4 AC092296.2-201ENST00000589470 999 ntBASIC32.64■■■□□ 2.82
USP42Q9H9J4 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC32.63■■■□□ 2.81
USP42Q9H9J4 RPS2-210ENST00000530225 765 ntTSL 2 BASIC32.63■■■□□ 2.81
USP42Q9H9J4 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC32.63■■■□□ 2.81
USP42Q9H9J4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
USP42Q9H9J4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC32.62■■■□□ 2.81
USP42Q9H9J4 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC32.62■■■□□ 2.81
USP42Q9H9J4 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC32.62■■■□□ 2.81
USP42Q9H9J4 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC32.61■■■□□ 2.81
USP42Q9H9J4 KRT18P60-201ENST00000312876 1297 ntBASIC32.61■■■□□ 2.81
USP42Q9H9J4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC32.61■■■□□ 2.81
USP42Q9H9J4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
USP42Q9H9J4 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
USP42Q9H9J4 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
USP42Q9H9J4 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
USP42Q9H9J4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC32.6■■■□□ 2.81
USP42Q9H9J4 MIR219A2-201ENST00000608502 1504 ntBASIC32.6■■■□□ 2.81
USP42Q9H9J4 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC32.6■■■□□ 2.81
USP42Q9H9J4 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC32.59■■■□□ 2.81
USP42Q9H9J4 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC32.59■■■□□ 2.81
USP42Q9H9J4 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC32.57■■■□□ 2.8
USP42Q9H9J4 TSPY13P-201ENST00000338964 914 ntBASIC32.56■■■□□ 2.8
USP42Q9H9J4 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
USP42Q9H9J4 AL135925.1-201ENST00000605920 1701 ntBASIC32.55■■■□□ 2.8
USP42Q9H9J4 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
USP42Q9H9J4 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 AC004987.1-201ENST00000428627 508 ntBASIC32.54■■■□□ 2.8
USP42Q9H9J4 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 PEX7-203ENST00000541292 945 ntTSL 5 BASIC32.54■■■□□ 2.8
USP42Q9H9J4 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
USP42Q9H9J4 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC32.53■■■□□ 2.8
USP42Q9H9J4 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
USP42Q9H9J4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
USP42Q9H9J4 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
USP42Q9H9J4 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC32.52■■■□□ 2.8
USP42Q9H9J4 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC32.52■■■□□ 2.8
USP42Q9H9J4 ATP5G2P3-201ENST00000429083 425 ntBASIC32.51■■■□□ 2.8
USP42Q9H9J4 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC32.51■■■□□ 2.8
USP42Q9H9J4 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC32.51■■■□□ 2.8
USP42Q9H9J4 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.8
USP42Q9H9J4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC32.51■■■□□ 2.79
USP42Q9H9J4 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC32.51■■■□□ 2.79
USP42Q9H9J4 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.79
USP42Q9H9J4 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
USP42Q9H9J4 ST7-AS1-201ENST00000456775 1889 ntBASIC32.5■■■□□ 2.79
USP42Q9H9J4 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
USP42Q9H9J4 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
USP42Q9H9J4 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC32.5■■■□□ 2.79
USP42Q9H9J4 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
USP42Q9H9J4 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC32.49■■■□□ 2.79
USP42Q9H9J4 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
USP42Q9H9J4 ECEL1P2-201ENST00000461596 1295 ntBASIC32.49■■■□□ 2.79
USP42Q9H9J4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC32.49■■■□□ 2.79
USP42Q9H9J4 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
USP42Q9H9J4 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
USP42Q9H9J4 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC32.48■■■□□ 2.79
USP42Q9H9J4 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
USP42Q9H9J4 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC32.47■■■□□ 2.79
USP42Q9H9J4 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC32.47■■■□□ 2.79
USP42Q9H9J4 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
USP42Q9H9J4 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC32.46■■■□□ 2.79
USP42Q9H9J4 GUK1-208ENST00000366728 842 ntTSL 2 BASIC32.46■■■□□ 2.79
USP42Q9H9J4 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
USP42Q9H9J4 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC32.45■■■□□ 2.79
USP42Q9H9J4 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC32.45■■■□□ 2.78
USP42Q9H9J4 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
USP42Q9H9J4 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC32.45■■■□□ 2.78
USP42Q9H9J4 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
USP42Q9H9J4 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
USP42Q9H9J4 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC32.44■■■□□ 2.78
USP42Q9H9J4 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
USP42Q9H9J4 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC32.44■■■□□ 2.78
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms