Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 WHAMMP2-203ENST00000563942 1603 ntBASIC31.7■■■□□ 2.66
COL4A5P29400 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
COL4A5P29400 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.69■■■□□ 2.66
COL4A5P29400 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL4A5P29400 GFER-205ENST00000569451 517 ntTSL 5 BASIC31.68■■■□□ 2.66
COL4A5P29400 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.68■■■□□ 2.66
COL4A5P29400 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL4A5P29400 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL4A5P29400 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL4A5P29400 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
COL4A5P29400 AC060814.1-201ENST00000554326 538 ntBASIC31.67■■■□□ 2.66
COL4A5P29400 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.66■■■□□ 2.66
COL4A5P29400 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
COL4A5P29400 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.66■■■□□ 2.66
COL4A5P29400 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.66■■■□□ 2.66
COL4A5P29400 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.65■■■□□ 2.66
COL4A5P29400 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
COL4A5P29400 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
COL4A5P29400 AC135983.2-203ENST00000454486 1613 ntBASIC31.65■■■□□ 2.66
COL4A5P29400 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.64■■■□□ 2.65
COL4A5P29400 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.64■■■□□ 2.65
COL4A5P29400 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.64■■■□□ 2.65
COL4A5P29400 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
COL4A5P29400 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.62■■■□□ 2.65
COL4A5P29400 HYI-213ENST00000583037 1322 ntTSL 5 BASIC31.62■■■□□ 2.65
COL4A5P29400 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.62■■■□□ 2.65
COL4A5P29400 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.62■■■□□ 2.65
COL4A5P29400 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL4A5P29400 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.61■■■□□ 2.65
COL4A5P29400 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.61■■■□□ 2.65
COL4A5P29400 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
COL4A5P29400 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
COL4A5P29400 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL4A5P29400 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL4A5P29400 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL4A5P29400 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
COL4A5P29400 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
COL4A5P29400 AC127502.1-201ENST00000399971 1502 ntBASIC31.58■■■□□ 2.65
COL4A5P29400 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.57■■■□□ 2.65
COL4A5P29400 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL4A5P29400 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL4A5P29400 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL4A5P29400 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.56■■■□□ 2.64
COL4A5P29400 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.56■■■□□ 2.64
COL4A5P29400 KRT18P60-201ENST00000312876 1297 ntBASIC31.55■■■□□ 2.64
COL4A5P29400 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL4A5P29400 AC148477.6-201ENST00000623746 465 ntBASIC31.55■■■□□ 2.64
COL4A5P29400 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.55■■■□□ 2.64
COL4A5P29400 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC31.54■■■□□ 2.64
COL4A5P29400 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.54■■■□□ 2.64
COL4A5P29400 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL4A5P29400 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.53■■■□□ 2.64
COL4A5P29400 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL4A5P29400 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC31.52■■■□□ 2.64
COL4A5P29400 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL4A5P29400 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC31.52■■■□□ 2.64
COL4A5P29400 AC092296.2-201ENST00000589470 999 ntBASIC31.51■■■□□ 2.64
COL4A5P29400 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL4A5P29400 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL4A5P29400 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.5■■■□□ 2.63
COL4A5P29400 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31.5■■■□□ 2.63
COL4A5P29400 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
COL4A5P29400 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.49■■■□□ 2.63
COL4A5P29400 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.47■■■□□ 2.63
COL4A5P29400 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL4A5P29400 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL4A5P29400 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL4A5P29400 AC004987.1-201ENST00000428627 508 ntBASIC31.44■■■□□ 2.62
COL4A5P29400 AC110285.7-201ENST00000624417 1536 ntBASIC31.44■■■□□ 2.62
COL4A5P29400 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
COL4A5P29400 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
COL4A5P29400 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
COL4A5P29400 TSPY13P-201ENST00000338964 914 ntBASIC31.41■■■□□ 2.62
COL4A5P29400 RARRES2P1-201ENST00000474487 481 ntBASIC31.41■■■□□ 2.62
COL4A5P29400 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.41■■■□□ 2.62
COL4A5P29400 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL4A5P29400 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL4A5P29400 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.41■■■□□ 2.62
COL4A5P29400 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.41■■■□□ 2.62
COL4A5P29400 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL4A5P29400 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
COL4A5P29400 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL4A5P29400 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC31.39■■■□□ 2.62
COL4A5P29400 ATP5G2P3-201ENST00000429083 425 ntBASIC31.38■■■□□ 2.61
COL4A5P29400 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL4A5P29400 MIR219A2-201ENST00000608502 1504 ntBASIC31.38■■■□□ 2.61
COL4A5P29400 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL4A5P29400 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.38■■■□□ 2.61
COL4A5P29400 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL4A5P29400 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
COL4A5P29400 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
COL4A5P29400 PEX7-203ENST00000541292 945 ntTSL 5 BASIC31.37■■■□□ 2.61
COL4A5P29400 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL4A5P29400 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
COL4A5P29400 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.36■■■□□ 2.61
COL4A5P29400 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.36■■■□□ 2.61
COL4A5P29400 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
COL4A5P29400 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.36■■■□□ 2.61
COL4A5P29400 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.36■■■□□ 2.61
COL4A5P29400 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms