Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
MMP1P03956 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
MMP1P03956 AC135983.2-203ENST00000454486 1613 ntBASIC29.61■■■□□ 2.33
MMP1P03956 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.61■■■□□ 2.33
MMP1P03956 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
MMP1P03956 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC29.6■■■□□ 2.33
MMP1P03956 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.6■■■□□ 2.33
MMP1P03956 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
MMP1P03956 LINC00273-201ENST00000539813 1452 ntBASIC29.6■■■□□ 2.33
MMP1P03956 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC29.59■■■□□ 2.33
MMP1P03956 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
MMP1P03956 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
MMP1P03956 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.59■■■□□ 2.33
MMP1P03956 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.59■■■□□ 2.33
MMP1P03956 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.59■■■□□ 2.33
MMP1P03956 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.59■■■□□ 2.33
MMP1P03956 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.59■■■□□ 2.33
MMP1P03956 HLA-V-202ENST00000446817 847 ntBASIC29.58■■■□□ 2.33
MMP1P03956 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.58■■■□□ 2.33
MMP1P03956 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
MMP1P03956 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC29.57■■■□□ 2.32
MMP1P03956 AC100797.4-201ENST00000631653 1827 ntBASIC29.57■■■□□ 2.32
MMP1P03956 AC142086.6-201ENST00000621154 1765 ntBASIC29.57■■■□□ 2.32
MMP1P03956 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC29.57■■■□□ 2.32
MMP1P03956 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MMP1P03956 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29.57■■■□□ 2.32
MMP1P03956 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC29.56■■■□□ 2.32
MMP1P03956 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC29.56■■■□□ 2.32
MMP1P03956 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC29.56■■■□□ 2.32
MMP1P03956 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.56■■■□□ 2.32
MMP1P03956 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
MMP1P03956 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
MMP1P03956 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC29.56■■■□□ 2.32
MMP1P03956 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
MMP1P03956 WHAMMP2-203ENST00000563942 1603 ntBASIC29.56■■■□□ 2.32
MMP1P03956 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.55■■■□□ 2.32
MMP1P03956 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
MMP1P03956 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
MMP1P03956 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC29.55■■■□□ 2.32
MMP1P03956 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
MMP1P03956 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.54■■■□□ 2.32
MMP1P03956 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC29.54■■■□□ 2.32
MMP1P03956 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
MMP1P03956 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC29.52■■■□□ 2.32
MMP1P03956 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
MMP1P03956 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
MMP1P03956 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC29.51■■■□□ 2.32
MMP1P03956 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
MMP1P03956 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
MMP1P03956 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC29.51■■■□□ 2.31
MMP1P03956 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.5■■■□□ 2.31
MMP1P03956 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
MMP1P03956 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC29.5■■■□□ 2.31
MMP1P03956 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.49■■■□□ 2.31
MMP1P03956 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.49■■■□□ 2.31
MMP1P03956 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
MMP1P03956 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
MMP1P03956 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.48■■■□□ 2.31
MMP1P03956 AC021231.2-201ENST00000594613 730 ntBASIC29.48■■■□□ 2.31
MMP1P03956 MEST-211ENST00000437945 1455 ntTSL 5 BASIC29.48■■■□□ 2.31
MMP1P03956 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC29.48■■■□□ 2.31
MMP1P03956 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.47■■■□□ 2.31
MMP1P03956 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC29.47■■■□□ 2.31
MMP1P03956 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC29.47■■■□□ 2.31
MMP1P03956 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
MMP1P03956 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
MMP1P03956 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
MMP1P03956 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
MMP1P03956 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.46■■■□□ 2.31
MMP1P03956 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
MMP1P03956 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
MMP1P03956 PROC-203ENST00000409048 1586 ntTSL 5 BASIC29.45■■■□□ 2.31
MMP1P03956 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
MMP1P03956 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.45■■■□□ 2.31
MMP1P03956 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
MMP1P03956 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.45■■■□□ 2.3
MMP1P03956 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
MMP1P03956 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.44■■■□□ 2.3
MMP1P03956 ZNRF2P2-203ENST00000454624 420 ntBASIC29.44■■■□□ 2.3
MMP1P03956 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
MMP1P03956 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
MMP1P03956 DUX4L29-201ENST00000425409 679 ntBASIC29.43■■■□□ 2.3
MMP1P03956 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
MMP1P03956 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC29.42■■■□□ 2.3
MMP1P03956 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC29.42■■■□□ 2.3
MMP1P03956 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
MMP1P03956 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
MMP1P03956 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC29.41■■■□□ 2.3
MMP1P03956 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
MMP1P03956 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.41■■■□□ 2.3
MMP1P03956 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
MMP1P03956 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
MMP1P03956 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.4■■■□□ 2.3
MMP1P03956 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC29.4■■■□□ 2.3
MMP1P03956 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC29.39■■■□□ 2.3
MMP1P03956 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.38■■■□□ 2.29
MMP1P03956 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.38■■■□□ 2.29
MMP1P03956 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.38■■■□□ 2.29
MMP1P03956 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.38■■■□□ 2.29
MMP1P03956 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms