Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 DUX4L28-201ENST00000623687 678 ntBASIC23.94■■□□□ 1.42
HMGN4O00479 AC100797.4-201ENST00000631653 1827 ntBASIC23.94■■□□□ 1.42
HMGN4O00479 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGN4O00479 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGN4O00479 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
HMGN4O00479 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGN4O00479 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGN4O00479 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGN4O00479 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGN4O00479 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGN4O00479 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.91■■□□□ 1.42
HMGN4O00479 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
HMGN4O00479 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.91■■□□□ 1.42
HMGN4O00479 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
HMGN4O00479 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGN4O00479 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGN4O00479 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
HMGN4O00479 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
HMGN4O00479 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.89■■□□□ 1.41
HMGN4O00479 AC108673.1-201ENST00000510422 1159 ntBASIC23.89■■□□□ 1.41
HMGN4O00479 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.88■■□□□ 1.41
HMGN4O00479 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HMGN4O00479 MIR6090-201ENST00000622481 60 ntBASIC23.88■■□□□ 1.41
HMGN4O00479 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
HMGN4O00479 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
HMGN4O00479 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
HMGN4O00479 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
HMGN4O00479 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGN4O00479 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGN4O00479 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HMGN4O00479 MIR3665-201ENST00000578708 105 ntBASIC23.86■■□□□ 1.41
HMGN4O00479 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.86■■□□□ 1.41
HMGN4O00479 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HMGN4O00479 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.85■■□□□ 1.41
HMGN4O00479 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
HMGN4O00479 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
HMGN4O00479 BX255925.1-201ENST00000566954 1854 ntBASIC23.85■■□□□ 1.41
HMGN4O00479 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGN4O00479 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGN4O00479 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
HMGN4O00479 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGN4O00479 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
HMGN4O00479 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGN4O00479 AC135983.2-203ENST00000454486 1613 ntBASIC23.82■■□□□ 1.4
HMGN4O00479 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
HMGN4O00479 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.82■■□□□ 1.4
HMGN4O00479 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.82■■□□□ 1.4
HMGN4O00479 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGN4O00479 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGN4O00479 AP006261.1-201ENST00000584783 668 ntBASIC23.81■■□□□ 1.4
HMGN4O00479 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGN4O00479 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.81■■□□□ 1.4
HMGN4O00479 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.81■■□□□ 1.4
HMGN4O00479 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
HMGN4O00479 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGN4O00479 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGN4O00479 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
HMGN4O00479 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.8■■□□□ 1.4
HMGN4O00479 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.8■■□□□ 1.4
HMGN4O00479 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGN4O00479 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGN4O00479 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGN4O00479 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
HMGN4O00479 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGN4O00479 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGN4O00479 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
HMGN4O00479 AL121749.1-202ENST00000609313 2153 ntBASIC23.79■■□□□ 1.4
HMGN4O00479 LINC01003-201ENST00000564834 1764 ntBASIC23.78■■□□□ 1.4
HMGN4O00479 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
HMGN4O00479 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.78■■□□□ 1.4
HMGN4O00479 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGN4O00479 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGN4O00479 WHAMMP2-203ENST00000563942 1603 ntBASIC23.77■■□□□ 1.4
HMGN4O00479 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGN4O00479 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.77■■□□□ 1.4
HMGN4O00479 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
HMGN4O00479 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGN4O00479 AP002414.2-202ENST00000590929 1450 ntBASIC23.75■■□□□ 1.39
HMGN4O00479 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
HMGN4O00479 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.75■■□□□ 1.39
HMGN4O00479 LINC00273-201ENST00000539813 1452 ntBASIC23.75■■□□□ 1.39
HMGN4O00479 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.74■■□□□ 1.39
HMGN4O00479 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGN4O00479 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.74■■□□□ 1.39
HMGN4O00479 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
HMGN4O00479 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGN4O00479 AC087741.3-201ENST00000624270 1347 ntBASIC23.73■■□□□ 1.39
HMGN4O00479 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HMGN4O00479 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.72■■□□□ 1.39
HMGN4O00479 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGN4O00479 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
HMGN4O00479 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGN4O00479 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGN4O00479 AL162393.1-201ENST00000437852 946 ntBASIC23.71■■□□□ 1.39
HMGN4O00479 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGN4O00479 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.7■■□□□ 1.38
HMGN4O00479 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGN4O00479 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
HMGN4O00479 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
HMGN4O00479 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 281.4 ms