Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 FST-202ENST00000396947 2538 ntTSL 5 BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS25Q9BRG1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 PCDHA12-202ENST00000613593 2588 ntBASIC13.9□□□□□ -0.18
VPS25Q9BRG1 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 STK24-203ENST00000397517 4578 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 AL136379.1-201ENST00000623471 2642 ntBASIC13.9□□□□□ -0.18
VPS25Q9BRG1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS25Q9BRG1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
VPS25Q9BRG1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
VPS25Q9BRG1 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS25Q9BRG1 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 AC092850.2-201ENST00000623821 2697 ntBASIC13.88□□□□□ -0.19
VPS25Q9BRG1 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 AC136428.2-201ENST00000563187 214 ntBASIC13.88□□□□□ -0.19
VPS25Q9BRG1 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms