RNA–Protein interactions for RNA: ENST00000289292.11

SHROOM4-201, Transcript of shroom family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM4, Length 6,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-201ENST00000289292 DCAF8L2P0C7V8 631 aa26.21■■□□□ 1.79
SHROOM4-201ENST00000289292 SUPT5HO00267 1087 aaKnown RBP25.47■■□□□ 1.67
SHROOM4-201ENST00000289292 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
SHROOM4-201ENST00000289292 NISCHQ9Y2I1 1504 aa25.04■■□□□ 1.6
SHROOM4-201ENST00000289292 EHMT2Q96KQ7 1210 aa24.93■■□□□ 1.58
SHROOM4-201ENST00000289292 PCGF6Q9BYE7 350 aa24.31■■□□□ 1.48
SHROOM4-201ENST00000289292 PELP1Q8IZL8 1130 aaKnown RBP24.18■■□□□ 1.46
SHROOM4-201ENST00000289292 TTBK1Q5TCY1 1321 aaPredicted RBP24.14■■□□□ 1.45
SHROOM4-201ENST00000289292 FAM9AQ8IZU1 332 aaPredicted RBP24.08■■□□□ 1.45
SHROOM4-201ENST00000289292 APLP2Q06481 763 aa23.75■■□□□ 1.39
SHROOM4-201ENST00000289292 CENPBP07199 599 aaPredicted RBP23.59■■□□□ 1.37
SHROOM4-201ENST00000289292 CCER1Q8TC90 406 aaPredicted RBP23.57■■□□□ 1.36
SHROOM4-201ENST00000289292 RANGAP1P46060 587 aaPredicted RBP23.54■■□□□ 1.36
SHROOM4-201ENST00000289292 YTHDC1Q96MU7 727 aaKnown RBP23.48■■□□□ 1.35
SHROOM4-201ENST00000289292 ZEB1P37275 1124 aaPredicted RBP23.48■■□□□ 1.35
SHROOM4-201ENST00000289292 ERICH6Q7L0X2 663 aa23.47■■□□□ 1.35
SHROOM4-201ENST00000289292 TRIM41Q8WV44 630 aa23.37■■□□□ 1.33
SHROOM4-201ENST00000289292 PPARGC1BQ86YN6 1023 aaKnown RBP23.36■■□□□ 1.33
SHROOM4-201ENST00000289292 MYT1Q01538 1121 aa23.28■■□□□ 1.32
SHROOM4-201ENST00000289292 HRCP23327 699 aa23.17■■□□□ 1.3
SHROOM4-201ENST00000289292 ATP1B4Q9UN42 357 aaPredicted RBP23.07■■□□□ 1.28
SHROOM4-201ENST00000289292 UBTFP17480 764 aaKnown RBP23.05■■□□□ 1.28
SHROOM4-201ENST00000289292 TRIM26Q12899 539 aaPredicted RBP23.01■■□□□ 1.27
SHROOM4-201ENST00000289292 LOC105371045A0A1W2PR82 267 aa22.94■■□□□ 1.26
SHROOM4-201ENST00000289292 NEFLP07196 543 aa22.91■■□□□ 1.26
SHROOM4-201ENST00000289292 CHIC1Q5VXU3 224 aa22.66■■□□□ 1.22
SHROOM4-201ENST00000289292 ITGAEP38570 1179 aa22.58■■□□□ 1.21
SHROOM4-201ENST00000289292 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.53■■□□□ 1.2
SHROOM4-201ENST00000289292 HNRNPUL2Q1KMD3 747 aaKnown RBP22.53■■□□□ 1.2
SHROOM4-201ENST00000289292 DIEXFQ68CQ4 756 aaKnown RBP22.41■■□□□ 1.18
SHROOM4-201ENST00000289292 CNGB1Q14028 1251 aaPredicted RBP22.4■■□□□ 1.18
SHROOM4-201ENST00000289292 POLR3GLQ9BT43 218 aa22.39■■□□□ 1.17
SHROOM4-201ENST00000289292 GTF3C3Q9Y5Q9 886 aa22.26■■□□□ 1.15
SHROOM4-201ENST00000289292 DAXXQ9UER7 740 aaPredicted RBP22.18■■□□□ 1.14
SHROOM4-201ENST00000289292 BCANQ96GW7 911 aa22.16■■□□□ 1.14
SHROOM4-201ENST00000289292 RTL5Q5HYW3 569 aaPredicted RBP21.94■■□□□ 1.1
SHROOM4-201ENST00000289292 NEUROD1Q13562 356 aa21.9■■□□□ 1.1
SHROOM4-201ENST00000289292 FAM50AQ14320 339 aaKnown RBP21.86■■□□□ 1.09
SHROOM4-201ENST00000289292 ACIN1Q9UKV3 1341 aaKnown RBP21.84■■□□□ 1.09
SHROOM4-201ENST00000289292 MYT1LQ9UL68 1186 aa21.82■■□□□ 1.08
SHROOM4-201ENST00000289292 ZNF316A6NFI3 1004 aaPredicted RBP21.79■■□□□ 1.08
SHROOM4-201ENST00000289292 CLSPNQ9HAW4 1339 aa21.71■■□□□ 1.07
SHROOM4-201ENST00000289292 SLC4A1APQ9BWU0 796 aaKnown RBP21.7■■□□□ 1.06
SHROOM4-201ENST00000289292 TRIM52Q96A61 297 aa21.66■■□□□ 1.06
SHROOM4-201ENST00000289292 CDK11AQ9UQ88 783 aaPredicted RBP21.63■■□□□ 1.05
SHROOM4-201ENST00000289292 ANP32CO43423 234 aa21.62■■□□□ 1.05
SHROOM4-201ENST00000289292 ZNF326Q5BKZ1 582 aaKnown RBP21.53■■□□□ 1.04
SHROOM4-201ENST00000289292 SCAF1Q9H7N4 1312 aaKnown RBP21.47■■□□□ 1.03
SHROOM4-201ENST00000289292 PABPN1Q86U42 306 aaKnown RBP eCLIP21.44■■□□□ 1.02
SHROOM4-201ENST00000289292 FKBP8Q14318 412 aa21.4■■□□□ 1.02
SHROOM4-201ENST00000289292 NPM2Q86SE8 214 aaKnown RBP21.36■■□□□ 1.01
SHROOM4-201ENST00000289292 BCL11AQ9H165 835 aa21.31■■□□□ 1
SHROOM4-201ENST00000289292 ABCC9O60706 1549 aa21.31■■□□□ 1
SHROOM4-201ENST00000289292 P3H3Q8IVL6 736 aa21.31■■□□□ 1
SHROOM4-201ENST00000289292 DCAF1Q9Y4B6 1507 aa21.3■■□□□ 1
SHROOM4-201ENST00000289292 EIF5BO60841 1220 aaKnown RBP21.25■□□□□ 0.99
SHROOM4-201ENST00000289292 ARID3CA6NKF2 412 aa21.25■□□□□ 0.99
SHROOM4-201ENST00000289292 ANP32AP39687 249 aaKnown RBP21.23■□□□□ 0.99
SHROOM4-201ENST00000289292 MYO15BQ96JP2 1530 aa21.21■□□□□ 0.99
SHROOM4-201ENST00000289292 CSRNP3Q8WYN3 585 aa21.17■□□□□ 0.98
SHROOM4-201ENST00000289292 CANXP27824 592 aaKnown RBP21.16■□□□□ 0.98
SHROOM4-201ENST00000289292 DDX10Q13206 875 aaKnown RBP21.16■□□□□ 0.98
SHROOM4-201ENST00000289292 MIER1Q8N108 512 aa21.13■□□□□ 0.97
SHROOM4-201ENST00000289292 NBR1Q14596 966 aa21.12■□□□□ 0.97
SHROOM4-201ENST00000289292 HNRNPUQ00839 825 aaKnown RBP eCLIP21.11■□□□□ 0.97
SHROOM4-201ENST00000289292 FAM9BQ8IZU0 186 aa21.07■□□□□ 0.96
SHROOM4-201ENST00000289292 IRX6P78412 446 aaPredicted RBP21.06■□□□□ 0.96
SHROOM4-201ENST00000289292 SALL2Q9Y467 1007 aaPredicted RBP21.01■□□□□ 0.95
SHROOM4-201ENST00000289292 SCRIBQ14160 1630 aa21■□□□□ 0.95
SHROOM4-201ENST00000289292 HIRIP3Q9BW71 556 aaPredicted RBP20.99■□□□□ 0.95
SHROOM4-201ENST00000289292 ZBTB47Q9UFB7 747 aaPredicted RBP20.98■□□□□ 0.95
SHROOM4-201ENST00000289292 FBLN2P98095 1184 aa20.96■□□□□ 0.95
SHROOM4-201ENST00000289292 ZNF777Q9ULD5 760 aaPredicted RBP20.95■□□□□ 0.94
SHROOM4-201ENST00000289292 TONSLQ96HA7 1378 aa20.95■□□□□ 0.94
SHROOM4-201ENST00000289292 SLC24A1O60721 1099 aa20.92■□□□□ 0.94
SHROOM4-201ENST00000289292 ARXQ96QS3 562 aa20.87■□□□□ 0.93
SHROOM4-201ENST00000289292 CCDC136Q96JN2 1154 aa20.83■□□□□ 0.92
SHROOM4-201ENST00000289292 CHIC2Q9UKJ5 165 aa20.79■□□□□ 0.92
SHROOM4-201ENST00000289292 ZCCHC6Q5VYS8 1495 aaKnown RBP20.79■□□□□ 0.92
SHROOM4-201ENST00000289292 SENP3-EIF4A1A0A087X0R7 540 aa20.76■□□□□ 0.91
SHROOM4-201ENST00000289292 CCDC180Q9P1Z9 1646 aa20.75■□□□□ 0.91
SHROOM4-201ENST00000289292 ANP32EQ9BTT0 268 aa20.74■□□□□ 0.91
SHROOM4-201ENST00000289292 MRS2Q9HD23 443 aa20.73■□□□□ 0.91
SHROOM4-201ENST00000289292 GLIPR1L2Q4G1C9 344 aa20.7■□□□□ 0.9
SHROOM4-201ENST00000289292 HSP90AA1P07900 732 aaKnown RBP20.7■□□□□ 0.9
SHROOM4-201ENST00000289292 TMC1Q8TDI8 760 aa20.69■□□□□ 0.9
SHROOM4-201ENST00000289292 NEFMP07197 916 aa20.68■□□□□ 0.9
SHROOM4-201ENST00000289292 ANP32BQ92688 251 aaKnown RBP20.63■□□□□ 0.89
SHROOM4-201ENST00000289292 UPF2Q9HAU5 1272 aaKnown RBP20.62■□□□□ 0.89
SHROOM4-201ENST00000289292 KDM2AQ9Y2K7 1162 aa20.61■□□□□ 0.89
SHROOM4-201ENST00000289292 CHGAP10645 457 aaKnown RBP20.57■□□□□ 0.88
SHROOM4-201ENST00000289292 CLIP1P30622 1438 aa20.56■□□□□ 0.88
SHROOM4-201ENST00000289292 SUPT16HQ9Y5B9 1047 aaKnown RBP20.56■□□□□ 0.88
SHROOM4-201ENST00000289292 CEP162Q5TB80 1403 aa20.55■□□□□ 0.88
SHROOM4-201ENST00000289292 RTN4Q9NQC3 1192 aaKnown RBP20.54■□□□□ 0.88
SHROOM4-201ENST00000289292 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.54■□□□□ 0.88
SHROOM4-201ENST00000289292 WDR43Q15061 677 aaKnown RBP eCLIP20.49■□□□□ 0.87
SHROOM4-201ENST00000289292 RRP7BPQ9NSQ0 103 aa20.49■□□□□ 0.87
SHROOM4-201ENST00000289292 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.44■□□□□ 0.86
SHROOM4-201ENST00000289292 EIF4G2P78344 907 aaKnown RBP eCLIP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 219.4 ms