RNA–Protein interactions for RNA: ENST00000303407.11

BRD3-201, Transcript of bromodomain containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene BRD3, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRD3-201ENST00000303407 NISCHQ9Y2I1 1504 aa28.59■■■□□ 2.17
BRD3-201ENST00000303407 DCAF8L2P0C7V8 631 aa28.51■■■□□ 2.15
BRD3-201ENST00000303407 SUPT5HO00267 1087 aaKnown RBP27.39■■□□□ 1.98
BRD3-201ENST00000303407 SHROOM4Q9ULL8 1493 aa27.18■■□□□ 1.94
BRD3-201ENST00000303407 EHMT2Q96KQ7 1210 aa26.3■■□□□ 1.8
BRD3-201ENST00000303407 FAM9AQ8IZU1 332 aaPredicted RBP25.75■■□□□ 1.71
BRD3-201ENST00000303407 APLP2Q06481 763 aa25.6■■□□□ 1.69
BRD3-201ENST00000303407 PCGF6Q9BYE7 350 aa25.59■■□□□ 1.69
BRD3-201ENST00000303407 TTBK1Q5TCY1 1321 aaPredicted RBP25.42■■□□□ 1.66
BRD3-201ENST00000303407 TRIM41Q8WV44 630 aa25.4■■□□□ 1.66
BRD3-201ENST00000303407 PELP1Q8IZL8 1130 aaKnown RBP25.15■■□□□ 1.62
BRD3-201ENST00000303407 RANGAP1P46060 587 aaPredicted RBP25.12■■□□□ 1.61
BRD3-201ENST00000303407 ZEB1P37275 1124 aaPredicted RBP25.06■■□□□ 1.6
BRD3-201ENST00000303407 CCER1Q8TC90 406 aaPredicted RBP24.97■■□□□ 1.59
BRD3-201ENST00000303407 UBTFP17480 764 aaKnown RBP24.94■■□□□ 1.58
BRD3-201ENST00000303407 ATP1B4Q9UN42 357 aaPredicted RBP24.77■■□□□ 1.56
BRD3-201ENST00000303407 CENPBP07199 599 aaPredicted RBP24.72■■□□□ 1.55
BRD3-201ENST00000303407 PPARGC1BQ86YN6 1023 aaKnown RBP24.69■■□□□ 1.54
BRD3-201ENST00000303407 CHIC1Q5VXU3 224 aa24.67■■□□□ 1.54
BRD3-201ENST00000303407 TRIM26Q12899 539 aaPredicted RBP24.65■■□□□ 1.54
BRD3-201ENST00000303407 LOC105371045A0A1W2PR82 267 aa24.57■■□□□ 1.52
BRD3-201ENST00000303407 HRCP23327 699 aa24.46■■□□□ 1.51
BRD3-201ENST00000303407 YTHDC1Q96MU7 727 aaKnown RBP24.35■■□□□ 1.49
BRD3-201ENST00000303407 ABCC9O60706 1549 aa24.22■■□□□ 1.47
BRD3-201ENST00000303407 ERICH6Q7L0X2 663 aa24.11■■□□□ 1.45
BRD3-201ENST00000303407 ITGAEP38570 1179 aa24.1■■□□□ 1.45
BRD3-201ENST00000303407 HNRNPUL2Q1KMD3 747 aaKnown RBP24.06■■□□□ 1.44
BRD3-201ENST00000303407 NEFLP07196 543 aa24.05■■□□□ 1.44
BRD3-201ENST00000303407 PABPN1Q86U42 306 aaKnown RBP eCLIP23.97■■□□□ 1.43
BRD3-201ENST00000303407 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.89■■□□□ 1.42
BRD3-201ENST00000303407 ZCCHC6Q5VYS8 1495 aaKnown RBP23.78■■□□□ 1.4
BRD3-201ENST00000303407 POLR3GLQ9BT43 218 aa23.65■■□□□ 1.38
BRD3-201ENST00000303407 DIEXFQ68CQ4 756 aaKnown RBP23.65■■□□□ 1.38
BRD3-201ENST00000303407 SCRIBQ14160 1630 aa23.64■■□□□ 1.38
BRD3-201ENST00000303407 CCDC180Q9P1Z9 1646 aa23.59■■□□□ 1.37
BRD3-201ENST00000303407 FAM50AQ14320 339 aaKnown RBP23.58■■□□□ 1.37
BRD3-201ENST00000303407 MYT1LQ9UL68 1186 aa23.58■■□□□ 1.37
BRD3-201ENST00000303407 MYT1Q01538 1121 aa23.46■■□□□ 1.35
BRD3-201ENST00000303407 CNGB1Q14028 1251 aaPredicted RBP23.44■■□□□ 1.34
BRD3-201ENST00000303407 NEUROD1Q13562 356 aa23.36■■□□□ 1.33
BRD3-201ENST00000303407 CSRNP3Q8WYN3 585 aa23.36■■□□□ 1.33
BRD3-201ENST00000303407 TRIM52Q96A61 297 aa23.34■■□□□ 1.33
BRD3-201ENST00000303407 DCAF1Q9Y4B6 1507 aa23.24■■□□□ 1.31
BRD3-201ENST00000303407 ZNF316A6NFI3 1004 aaPredicted RBP23.19■■□□□ 1.3
BRD3-201ENST00000303407 P3H3Q8IVL6 736 aa23.15■■□□□ 1.3
BRD3-201ENST00000303407 DAXXQ9UER7 740 aaPredicted RBP23.15■■□□□ 1.3
BRD3-201ENST00000303407 GTF3C3Q9Y5Q9 886 aa23.11■■□□□ 1.29
BRD3-201ENST00000303407 SLC4A1APQ9BWU0 796 aaKnown RBP23.08■■□□□ 1.29
BRD3-201ENST00000303407 ANP32CO43423 234 aa23.05■■□□□ 1.28
BRD3-201ENST00000303407 FBLN2P98095 1184 aa23.05■■□□□ 1.28
BRD3-201ENST00000303407 ZNF326Q5BKZ1 582 aaKnown RBP23■■□□□ 1.27
BRD3-201ENST00000303407 MYO15BQ96JP2 1530 aa23■■□□□ 1.27
BRD3-201ENST00000303407 ARID3CA6NKF2 412 aa22.97■■□□□ 1.27
BRD3-201ENST00000303407 BCANQ96GW7 911 aa22.96■■□□□ 1.27
BRD3-201ENST00000303407 RB1CC1Q8TDY2 1594 aa22.9■■□□□ 1.26
BRD3-201ENST00000303407 RSF1Q96T23 1441 aaPredicted RBP22.89■■□□□ 1.26
BRD3-201ENST00000303407 ACIN1Q9UKV3 1341 aaKnown RBP22.88■■□□□ 1.25
BRD3-201ENST00000303407 CLSPNQ9HAW4 1339 aa22.77■■□□□ 1.24
BRD3-201ENST00000303407 ZNF777Q9ULD5 760 aaPredicted RBP22.77■■□□□ 1.23
BRD3-201ENST00000303407 NACADO15069 1562 aa22.75■■□□□ 1.23
BRD3-201ENST00000303407 RTL5Q5HYW3 569 aaPredicted RBP22.7■■□□□ 1.22
BRD3-201ENST00000303407 CDK11AQ9UQ88 783 aaPredicted RBP22.69■■□□□ 1.22
BRD3-201ENST00000303407 CLIP1P30622 1438 aa22.66■■□□□ 1.22
BRD3-201ENST00000303407 TONSLQ96HA7 1378 aa22.66■■□□□ 1.22
BRD3-201ENST00000303407 GOLGA3Q08378 1498 aa22.61■■□□□ 1.21
BRD3-201ENST00000303407 CEP162Q5TB80 1403 aa22.6■■□□□ 1.21
BRD3-201ENST00000303407 EEA1Q15075 1411 aa22.58■■□□□ 1.21
BRD3-201ENST00000303407 WRNQ14191 1432 aaPredicted RBP eCLIP22.52■■□□□ 1.2
BRD3-201ENST00000303407 DDX10Q13206 875 aaKnown RBP22.51■■□□□ 1.19
BRD3-201ENST00000303407 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
BRD3-201ENST00000303407 CHIC2Q9UKJ5 165 aa22.5■■□□□ 1.19
BRD3-201ENST00000303407 MTUS2Q5JR59 1369 aa22.44■■□□□ 1.18
BRD3-201ENST00000303407 BAZ1AQ9NRL2 1556 aaPredicted RBP22.44■■□□□ 1.18
BRD3-201ENST00000303407 CANXP27824 592 aaKnown RBP22.44■■□□□ 1.18
BRD3-201ENST00000303407 FKBP8Q14318 412 aa22.42■■□□□ 1.18
BRD3-201ENST00000303407 TNIKQ9UKE5 1360 aa22.41■■□□□ 1.18
BRD3-201ENST00000303407 CECR2Q9BXF3 1484 aa22.41■■□□□ 1.18
BRD3-201ENST00000303407 CEP164Q9UPV0 1460 aa22.38■■□□□ 1.17
BRD3-201ENST00000303407 HNRNPUQ00839 825 aaKnown RBP eCLIP22.37■■□□□ 1.17
BRD3-201ENST00000303407 MIER1Q8N108 512 aa22.35■■□□□ 1.17
BRD3-201ENST00000303407 FAM9BQ8IZU0 186 aa22.33■■□□□ 1.17
BRD3-201ENST00000303407 KIF27Q86VH2 1401 aa22.3■■□□□ 1.16
BRD3-201ENST00000303407 ZBTB47Q9UFB7 747 aaPredicted RBP22.29■■□□□ 1.16
BRD3-201ENST00000303407 NEFMP07197 916 aa22.27■■□□□ 1.16
BRD3-201ENST00000303407 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.25■■□□□ 1.151e-6■■■□□ 15.2
BRD3-201ENST00000303407 CHMP7Q8WUX9 453 aaPredicted RBP22.25■■□□□ 1.15
BRD3-201ENST00000303407 SCAF1Q9H7N4 1312 aaKnown RBP22.25■■□□□ 1.15
BRD3-201ENST00000303407 ANP32AP39687 249 aaKnown RBP22.25■■□□□ 1.15
BRD3-201ENST00000303407 HIRIP3Q9BW71 556 aaPredicted RBP22.24■■□□□ 1.15
BRD3-201ENST00000303407 CHGAP10645 457 aaKnown RBP22.24■■□□□ 1.15
BRD3-201ENST00000303407 RRP7BPQ9NSQ0 103 aa22.23■■□□□ 1.15
BRD3-201ENST00000303407 TSPY4P0CV99 314 aa22.19■■□□□ 1.14
BRD3-201ENST00000303407 TSPY10P0CW01 314 aa22.19■■□□□ 1.14
BRD3-201ENST00000303407 MROH2BQ7Z745 1585 aa22.19■■□□□ 1.14
BRD3-201ENST00000303407 BCL11AQ9H165 835 aa22.18■■□□□ 1.14
BRD3-201ENST00000303407 NPM2Q86SE8 214 aaKnown RBP22.18■■□□□ 1.14
BRD3-201ENST00000303407 SLC24A1O60721 1099 aa22.17■■□□□ 1.14
BRD3-201ENST00000303407 KDM2AQ9Y2K7 1162 aa22.17■■□□□ 1.14
BRD3-201ENST00000303407 SOGA1O94964 1423 aa22.17■■□□□ 1.14
BRD3-201ENST00000303407 TMC1Q8TDI8 760 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms