Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC33.53■■■□□ 2.96
USP42Q9H9J4 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
USP42Q9H9J4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
USP42Q9H9J4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
USP42Q9H9J4 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC33.51■■■□□ 2.95
USP42Q9H9J4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
USP42Q9H9J4 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
USP42Q9H9J4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
USP42Q9H9J4 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC33.5■■■□□ 2.95
USP42Q9H9J4 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
USP42Q9H9J4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC33.49■■■□□ 2.95
USP42Q9H9J4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
USP42Q9H9J4 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
USP42Q9H9J4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC33.47■■■□□ 2.95
USP42Q9H9J4 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC33.47■■■□□ 2.95
USP42Q9H9J4 ABHD17AP5-201ENST00000580133 923 ntBASIC33.46■■■□□ 2.95
USP42Q9H9J4 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
USP42Q9H9J4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC33.44■■■□□ 2.94
USP42Q9H9J4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
USP42Q9H9J4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
USP42Q9H9J4 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
USP42Q9H9J4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC33.42■■■□□ 2.94
USP42Q9H9J4 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
USP42Q9H9J4 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC33.42■■■□□ 2.94
USP42Q9H9J4 GPX1-201ENST00000419349 1106 ntBASIC33.41■■■□□ 2.94
USP42Q9H9J4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC33.4■■■□□ 2.94
USP42Q9H9J4 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC33.4■■■□□ 2.94
USP42Q9H9J4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC33.4■■■□□ 2.94
USP42Q9H9J4 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC33.39■■■□□ 2.94
USP42Q9H9J4 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC33.39■■■□□ 2.94
USP42Q9H9J4 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC33.39■■■□□ 2.94
USP42Q9H9J4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
USP42Q9H9J4 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
USP42Q9H9J4 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
USP42Q9H9J4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
USP42Q9H9J4 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC33.36■■■□□ 2.93
USP42Q9H9J4 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC33.36■■■□□ 2.93
USP42Q9H9J4 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
USP42Q9H9J4 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC33.35■■■□□ 2.93
USP42Q9H9J4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC33.35■■■□□ 2.93
USP42Q9H9J4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC33.35■■■□□ 2.93
USP42Q9H9J4 LINC00273-201ENST00000539813 1452 ntBASIC33.35■■■□□ 2.93
USP42Q9H9J4 RNF126P1-201ENST00000567452 1320 ntBASIC33.34■■■□□ 2.93
USP42Q9H9J4 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC33.34■■■□□ 2.93
USP42Q9H9J4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
USP42Q9H9J4 TPT1-202ENST00000379055 948 ntTSL 2 BASIC33.33■■■□□ 2.93
USP42Q9H9J4 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
USP42Q9H9J4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC33.33■■■□□ 2.93
USP42Q9H9J4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC33.32■■■□□ 2.93
USP42Q9H9J4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC33.32■■■□□ 2.92
USP42Q9H9J4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC33.32■■■□□ 2.92
USP42Q9H9J4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC33.32■■■□□ 2.92
USP42Q9H9J4 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC33.31■■■□□ 2.92
USP42Q9H9J4 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC33.31■■■□□ 2.92
USP42Q9H9J4 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC33.31■■■□□ 2.92
USP42Q9H9J4 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC33.31■■■□□ 2.92
USP42Q9H9J4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
USP42Q9H9J4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC33.3■■■□□ 2.92
USP42Q9H9J4 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC33.3■■■□□ 2.92
USP42Q9H9J4 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC33.29■■■□□ 2.92
USP42Q9H9J4 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC33.29■■■□□ 2.92
USP42Q9H9J4 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
USP42Q9H9J4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC33.29■■■□□ 2.92
USP42Q9H9J4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC33.28■■■□□ 2.92
USP42Q9H9J4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
USP42Q9H9J4 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC33.26■■■□□ 2.92
USP42Q9H9J4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
USP42Q9H9J4 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
USP42Q9H9J4 ST7-205ENST00000393446 2114 ntTSL 5 BASIC33.25■■■□□ 2.91
USP42Q9H9J4 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC33.23■■■□□ 2.91
USP42Q9H9J4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
USP42Q9H9J4 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC33.22■■■□□ 2.91
USP42Q9H9J4 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC33.22■■■□□ 2.91
USP42Q9H9J4 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC33.21■■■□□ 2.91
USP42Q9H9J4 CEP120-209ENST00000515110 606 ntTSL 3 BASIC33.21■■■□□ 2.91
USP42Q9H9J4 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC33.2■■■□□ 2.91
USP42Q9H9J4 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC33.2■■■□□ 2.91
USP42Q9H9J4 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
USP42Q9H9J4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC33.19■■■□□ 2.9
USP42Q9H9J4 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
USP42Q9H9J4 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
USP42Q9H9J4 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
USP42Q9H9J4 AL161658.1-201ENST00000623641 1967 ntBASIC33.18■■■□□ 2.9
USP42Q9H9J4 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC33.16■■■□□ 2.9
USP42Q9H9J4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
USP42Q9H9J4 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
USP42Q9H9J4 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
USP42Q9H9J4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
USP42Q9H9J4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC33.15■■■□□ 2.9
USP42Q9H9J4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
USP42Q9H9J4 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC33.14■■■□□ 2.9
USP42Q9H9J4 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
USP42Q9H9J4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC33.14■■■□□ 2.9
USP42Q9H9J4 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
USP42Q9H9J4 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
USP42Q9H9J4 ST7-202ENST00000323984 2142 ntTSL 5 BASIC33.13■■■□□ 2.89
USP42Q9H9J4 ST7-207ENST00000393449 2127 ntTSL 5 BASIC33.13■■■□□ 2.89
USP42Q9H9J4 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
USP42Q9H9J4 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC33.12■■■□□ 2.89
USP42Q9H9J4 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms