Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
UBQLN3Q9H347 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
UBQLN3Q9H347 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
UBQLN3Q9H347 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
UBQLN3Q9H347 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
UBQLN3Q9H347 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
UBQLN3Q9H347 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
UBQLN3Q9H347 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
UBQLN3Q9H347 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
UBQLN3Q9H347 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
UBQLN3Q9H347 ABHD17AP4-201ENST00000411545 909 ntBASIC23.98■■□□□ 1.43
UBQLN3Q9H347 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
UBQLN3Q9H347 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
UBQLN3Q9H347 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC23.98■■□□□ 1.43
UBQLN3Q9H347 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC23.97■■□□□ 1.43
UBQLN3Q9H347 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.97■■□□□ 1.43
UBQLN3Q9H347 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.97■■□□□ 1.43
UBQLN3Q9H347 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
UBQLN3Q9H347 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
UBQLN3Q9H347 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.96■■□□□ 1.43
UBQLN3Q9H347 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.96■■□□□ 1.43
UBQLN3Q9H347 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.94■■□□□ 1.42
UBQLN3Q9H347 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.94■■□□□ 1.42
UBQLN3Q9H347 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.94■■□□□ 1.42
UBQLN3Q9H347 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UBQLN3Q9H347 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UBQLN3Q9H347 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.93■■□□□ 1.42
UBQLN3Q9H347 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.93■■□□□ 1.42
UBQLN3Q9H347 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UBQLN3Q9H347 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBQLN3Q9H347 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
UBQLN3Q9H347 DUX4L29-201ENST00000425409 679 ntBASIC23.92■■□□□ 1.42
UBQLN3Q9H347 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.92■■□□□ 1.42
UBQLN3Q9H347 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.92■■□□□ 1.42
UBQLN3Q9H347 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UBQLN3Q9H347 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
UBQLN3Q9H347 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.91■■□□□ 1.42
UBQLN3Q9H347 AC021231.2-201ENST00000594613 730 ntBASIC23.9■■□□□ 1.42
UBQLN3Q9H347 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
UBQLN3Q9H347 AC010864.1-201ENST00000609407 1511 ntBASIC23.89■■□□□ 1.42
UBQLN3Q9H347 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
UBQLN3Q9H347 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
UBQLN3Q9H347 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
UBQLN3Q9H347 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
UBQLN3Q9H347 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
UBQLN3Q9H347 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
UBQLN3Q9H347 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
UBQLN3Q9H347 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
UBQLN3Q9H347 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.87■■□□□ 1.41
UBQLN3Q9H347 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
UBQLN3Q9H347 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
UBQLN3Q9H347 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
UBQLN3Q9H347 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
UBQLN3Q9H347 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
UBQLN3Q9H347 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
UBQLN3Q9H347 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
UBQLN3Q9H347 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
UBQLN3Q9H347 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.85■■□□□ 1.41
UBQLN3Q9H347 ZNRF2P2-203ENST00000454624 420 ntBASIC23.84■■□□□ 1.41
UBQLN3Q9H347 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
UBQLN3Q9H347 MIR7108-201ENST00000614319 87 ntBASIC23.83■■□□□ 1.41
UBQLN3Q9H347 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
UBQLN3Q9H347 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
UBQLN3Q9H347 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
UBQLN3Q9H347 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
UBQLN3Q9H347 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.82■■□□□ 1.4
UBQLN3Q9H347 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.82■■□□□ 1.4
UBQLN3Q9H347 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
UBQLN3Q9H347 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBQLN3Q9H347 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBQLN3Q9H347 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.8■■□□□ 1.4
UBQLN3Q9H347 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBQLN3Q9H347 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBQLN3Q9H347 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBQLN3Q9H347 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
UBQLN3Q9H347 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UBQLN3Q9H347 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.79■■□□□ 1.4
UBQLN3Q9H347 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.79■■□□□ 1.4
UBQLN3Q9H347 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
UBQLN3Q9H347 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UBQLN3Q9H347 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.78■■□□□ 1.4
UBQLN3Q9H347 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBQLN3Q9H347 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UBQLN3Q9H347 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBQLN3Q9H347 AL139393.2-201ENST00000608721 2025 ntBASIC23.77■■□□□ 1.4
UBQLN3Q9H347 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.76■■□□□ 1.39
UBQLN3Q9H347 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBQLN3Q9H347 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
UBQLN3Q9H347 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.76■■□□□ 1.39
UBQLN3Q9H347 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.76■■□□□ 1.39
UBQLN3Q9H347 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBQLN3Q9H347 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
UBQLN3Q9H347 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
UBQLN3Q9H347 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
UBQLN3Q9H347 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.75■■□□□ 1.39
UBQLN3Q9H347 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UBQLN3Q9H347 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
UBQLN3Q9H347 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
UBQLN3Q9H347 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.74■■□□□ 1.39
UBQLN3Q9H347 AC142086.6-201ENST00000621154 1765 ntBASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 469.9 ms