Protein–RNA interactions for Protein: Q8NE71

ABCF1, ATP-binding cassette sub-family F member 1, humanhuman

Known RBP eCLIP

Length 845 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1Q8NE71 MED15-218ENST00000451058 418 ntTSL 328.69■■■□□ 2.181e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-205ENST00000414658 717 ntTSL 327.79■■■□□ 2.041e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-221ENST00000473028 556 ntTSL 426.33■■□□□ 1.811e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-207ENST00000423862 581 ntTSL 326.06■■□□□ 1.761e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-214ENST00000441501 840 ntTSL 325.48■■□□□ 1.671e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-206ENST00000420849 430 ntTSL 325.3■■□□□ 1.641e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-216ENST00000445189 596 ntTSL 425.3■■□□□ 1.641e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-208ENST00000424287 589 ntTSL 424.37■■□□□ 1.491e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-224ENST00000476767 590 ntTSL 424.37■■□□□ 1.491e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-217ENST00000445987 590 ntTSL 424.26■■□□□ 1.471e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-219ENST00000457322 623 ntTSL 424.26■■□□□ 1.471e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-228ENST00000487550 587 ntTSL 323.69■■□□□ 1.381e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.651e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC18.65■□□□□ 0.581e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC18.25■□□□□ 0.511e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-211ENST00000433831 3267 ntTSL 517.53■□□□□ 0.41e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.231e-6■□□□□ 9.2
ABCF1Q8NE71 RAB10-201ENST00000264710 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.181e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-230ENST00000492381 3619 ntTSL 213.1□□□□□ -0.311e-6■□□□□ 9.2
ABCF1Q8NE71 MED15-209ENST00000428629 572 ntTSL 412.76□□□□□ -0.371e-6■□□□□ 9.2
ABCF1Q8NE71 LTBP4-204ENST00000318809 1700 ntTSL 225.06■■□□□ 1.64e-7■□□□□ 9.2
ABCF1Q8NE71 LTBP4-225ENST00000599225 281 ntTSL 324.54■■□□□ 1.524e-7■□□□□ 9.2
ABCF1Q8NE71 LTBP4-220ENST00000598166 699 ntTSL 522.63■■□□□ 1.214e-7■□□□□ 9.2
ABCF1Q8NE71 LTBP4-212ENST00000595118 2446 ntTSL 222.35■■□□□ 1.174e-7■□□□□ 9.2
ABCF1Q8NE71 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.124e-7■□□□□ 9.2
ABCF1Q8NE71 LTBP4-229ENST00000601032 2019 ntTSL 1 (best)21.8■■□□□ 1.084e-7■□□□□ 9.2
ABCF1Q8NE71 LTBP4-202ENST00000243562 3140 ntTSL 217.42■□□□□ 0.384e-7■□□□□ 9.2
ABCF1Q8NE71 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.34e-8■□□□□ 9.1
ABCF1Q8NE71 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.214e-8■□□□□ 9.1
ABCF1Q8NE71 FLNA-206ENST00000420627 8225 ntTSL 515.89■□□□□ 0.134e-8■□□□□ 9.1
ABCF1Q8NE71 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.064e-8■□□□□ 9.1
ABCF1Q8NE71 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.054e-8■□□□□ 9.1
ABCF1Q8NE71 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.044e-8■□□□□ 9.1
ABCF1Q8NE71 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC14.58□□□□□ -0.084e-8■□□□□ 9.1
ABCF1Q8NE71 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC37.83■■■■□ 3.658e-8■□□□□ 9.1
ABCF1Q8NE71 SAMD1-201ENST00000269724 750 ntAPPRIS ALT2 TSL 528.3■■■□□ 2.128e-8■□□□□ 9.1
ABCF1Q8NE71 NOP58-207ENST00000478941 508 ntTSL 39.26□□□□□ -0.935e-9■□□□□ 9
ABCF1Q8NE71 SNORD70.1-201ENST00000391007 85 ntBASIC4.02□□□□□ -1.775e-9■□□□□ 9
ABCF1Q8NE71 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC21.6■■□□□ 1.056e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-216ENST00000541416 996 ntTSL 218.98■□□□□ 0.636e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-221ENST00000544983 870 ntTSL 217.12■□□□□ 0.336e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-206ENST00000537925 1487 ntTSL 1 (best) BASIC16.84■□□□□ 0.296e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-215ENST00000540904 594 ntTSL 513.66□□□□□ -0.226e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC11.52□□□□□ -0.576e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-209ENST00000538654 2768 ntTSL 210.72□□□□□ -0.696e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC9.39□□□□□ -0.916e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-207ENST00000537965 578 ntTSL 58.22□□□□□ -1.096e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC8.13□□□□□ -1.116e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC7.53□□□□□ -1.26e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC7.36□□□□□ -1.236e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-214ENST00000540865 784 ntTSL 57.28□□□□□ -1.246e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-220ENST00000544550 636 ntTSL 26.48□□□□□ -1.376e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC6.42□□□□□ -1.386e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-224ENST00000545688 610 ntTSL 36.4□□□□□ -1.386e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC6.17□□□□□ -1.426e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-203ENST00000537024 532 ntTSL 55.95□□□□□ -1.466e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.3□□□□□ -1.566e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.23□□□□□ -1.576e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-222ENST00000545308 646 ntTSL 25.12□□□□□ -1.596e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-202ENST00000535689 550 ntTSL 24.43□□□□□ -1.76e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.04□□□□□ -1.766e-32■□□□□ 8.9
ABCF1Q8NE71 SNORD28-201ENST00000384706 75 ntBASIC0.78□□□□□ -2.286e-32■□□□□ 8.9
ABCF1Q8NE71 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC23.56■■□□□ 1.362e-10■□□□□ 8.9
ABCF1Q8NE71 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.26■□□□□ 0.992e-10■□□□□ 8.9
ABCF1Q8NE71 WAC-220ENST00000532233 543 ntTSL 421.19■□□□□ 0.982e-10■□□□□ 8.9
ABCF1Q8NE71 WAC-217ENST00000526722 585 ntTSL 420.93■□□□□ 0.942e-10■□□□□ 8.9
ABCF1Q8NE71 WAC-218ENST00000528491 507 ntTSL 420.93■□□□□ 0.942e-10■□□□□ 8.9
ABCF1Q8NE71 WAC-207ENST00000420266 784 ntTSL 520.73■□□□□ 0.912e-10■□□□□ 8.9
ABCF1Q8NE71 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.652e-10■□□□□ 8.9
ABCF1Q8NE71 WAC-204ENST00000375646 2176 ntTSL 5 BASIC17.21■□□□□ 0.352e-10■□□□□ 8.9
ABCF1Q8NE71 WAC-208ENST00000424454 1330 ntTSL 27.4□□□□□ -1.222e-10■□□□□ 8.9
ABCF1Q8NE71 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.39□□□□□ -1.392e-10■□□□□ 8.9
ABCF1Q8NE71 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC27.46■■□□□ 1.995e-6■□□□□ 8.9
ABCF1Q8NE71 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.855e-6■□□□□ 8.9
ABCF1Q8NE71 HIRA-203ENST00000452818 453 ntTSL 517.13■□□□□ 0.335e-6■□□□□ 8.9
ABCF1Q8NE71 C22orf39-204ENST00000509549 2979 ntTSL 216.7■□□□□ 0.265e-6■□□□□ 8.9
ABCF1Q8NE71 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.131e-5■□□□□ 8.9
ABCF1Q8NE71 PPP6R1-204ENST00000587457 2389 ntTSL 220.35■□□□□ 0.851e-5■□□□□ 8.9
ABCF1Q8NE71 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.591e-5■□□□□ 8.9
ABCF1Q8NE71 HSPA5-201ENST00000324460 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.341e-5■□□□□ 8.9
ABCF1Q8NE71 SFPQ-201ENST00000357214 3747 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.046e-7■□□□□ 8.8
ABCF1Q8NE71 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC28.92■■■□□ 2.228e-8■□□□□ 8.7
ABCF1Q8NE71 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC27.41■■□□□ 1.988e-8■□□□□ 8.7
ABCF1Q8NE71 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.98e-8■□□□□ 8.7
ABCF1Q8NE71 BRD4-208ENST00000597315 892 ntTSL 540.14■■■■■ 4.023e-9■□□□□ 8.7
ABCF1Q8NE71 BRD4-212ENST00000630599 726 ntTSL 2 BASIC38.51■■■■□ 3.763e-9■□□□□ 8.7
ABCF1Q8NE71 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.863e-9■□□□□ 8.7
ABCF1Q8NE71 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.273e-9■□□□□ 8.7
ABCF1Q8NE71 PRRC2A-211ENST00000484787 756 ntTSL 220■□□□□ 0.793e-9■□□□□ 8.7
ABCF1Q8NE71 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.013e-9■□□□□ 8.7
ABCF1Q8NE71 GPI-212ENST00000589985 1516 ntTSL 327.36■■□□□ 1.976e-6■□□□□ 8.7
ABCF1Q8NE71 SNHG7-202ENST00000416970 789 ntTSL 1 (best)34.57■■■■□ 3.127e-55■□□□□ 8.7
ABCF1Q8NE71 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC32.33■■■□□ 2.777e-55■□□□□ 8.7
ABCF1Q8NE71 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC29.21■■■□□ 2.277e-55■□□□□ 8.7
ABCF1Q8NE71 SNORA17A-201ENST00000391185 133 ntBASIC9.29□□□□□ -0.927e-55■□□□□ 8.7
ABCF1Q8NE71 SNORA17.5-201ENST00000630429 132 ntBASIC9.29□□□□□ -0.927e-55■□□□□ 8.7
ABCF1Q8NE71 SRRM2-222ENST00000575009 1146 ntTSL 538.96■■■■□ 3.831e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC34.19■■■■□ 3.061e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-229ENST00000576894 2210 ntTSL 1 (best)26.46■■□□□ 1.831e-6■□□□□ 8.6
ABCF1Q8NE71 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.466e-7■□□□□ 8.6
Retrieved 100 of 811 protein–RNA pairs in 50 ms