Protein–RNA interactions for Protein: Q8NE71

ABCF1, ATP-binding cassette sub-family F member 1, humanhuman

Known RBP eCLIP

Length 845 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1Q8NE71 SCARNA2-201ENST00000458748 420 ntBASIC26.28■■□□□ 1.81e-323■□□□□ 8.1
ABCF1Q8NE71 AL356488.2-201ENST00000602755 427 ntBASIC26.01■■□□□ 1.751e-323■□□□□ 8.1
ABCF1Q8NE71 snoU2-30.2-201ENST00000362805 70 ntBASIC2.52□□□□□ -2.018e-83■■□□□ 11.8
ABCF1Q8NE71 RPL7A-205ENST00000468019 941 ntTSL 219.92■□□□□ 0.781e-62■■■□□ 14.6
ABCF1Q8NE71 RPL7A-207ENST00000489392 966 ntTSL 515.48■□□□□ 0.071e-62■■■□□ 14.6
ABCF1Q8NE71 RPL7A-201ENST00000315731 680 ntTSL 2 BASIC12□□□□□ -0.491e-62■■■□□ 14.6
ABCF1Q8NE71 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.771e-62■■■□□ 14.6
ABCF1Q8NE71 RPL7A-204ENST00000463740 1164 ntTSL 59.95□□□□□ -0.821e-62■■■□□ 14.6
ABCF1Q8NE71 RPL7A-208ENST00000492798 374 ntTSL 1 (best)9.94□□□□□ -0.821e-62■■■□□ 14.6
ABCF1Q8NE71 SNORD36C-201ENST00000516733 66 ntBASIC1.85□□□□□ -2.111e-62■■■□□ 14.6
ABCF1Q8NE71 NCL-202ENST00000356936 890 ntTSL 325.73■■□□□ 1.712e-60■□□□□ 8.1
ABCF1Q8NE71 NCL-208ENST00000466274 671 ntTSL 29.33□□□□□ -0.922e-60■□□□□ 8.1
ABCF1Q8NE71 SNORD20-201ENST00000384550 80 ntBASIC1.05□□□□□ -2.242e-60■□□□□ 8.1
ABCF1Q8NE71 SNHG7-202ENST00000416970 789 ntTSL 1 (best)34.57■■■■□ 3.127e-55■□□□□ 8.7
ABCF1Q8NE71 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC32.33■■■□□ 2.777e-55■□□□□ 8.7
ABCF1Q8NE71 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC29.21■■■□□ 2.277e-55■□□□□ 8.7
ABCF1Q8NE71 SNORA17.5-201ENST00000630429 132 ntBASIC9.29□□□□□ -0.927e-55■□□□□ 8.7
ABCF1Q8NE71 SNORA17A-201ENST00000391185 133 ntBASIC9.29□□□□□ -0.927e-55■□□□□ 8.7
ABCF1Q8NE71 snoU2_19.4-201ENST00000364329 80 ntBASIC2.29□□□□□ -2.043e-50■□□□□ 11.3
ABCF1Q8NE71 HSPA9-212ENST00000523929 780 ntTSL 421.58■■□□□ 1.051e-39■■□□□ 12.6
ABCF1Q8NE71 HSPA9-207ENST00000507097 1796 ntTSL 217.74■□□□□ 0.431e-39■■□□□ 12.6
ABCF1Q8NE71 HSPA9-210ENST00000508003 582 ntTSL 216.81■□□□□ 0.281e-39■■□□□ 12.6
ABCF1Q8NE71 HSPA9-201ENST00000297185 3321 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.231e-39■■□□□ 12.6
ABCF1Q8NE71 HSPA9-202ENST00000501917 275 ntTSL 34.51□□□□□ -1.691e-39■■□□□ 12.6
ABCF1Q8NE71 SNORD63-201ENST00000384262 68 ntBASIC2.82□□□□□ -1.961e-39■■□□□ 12.6
ABCF1Q8NE71 TBRG4-214ENST00000488222 972 ntTSL 326.05■■□□□ 1.763e-32■■■□□ 16.5
ABCF1Q8NE71 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC23.49■■□□□ 1.353e-32■■■□□ 16.5
ABCF1Q8NE71 TBRG4-213ENST00000484326 835 ntTSL 222.61■■□□□ 1.213e-32■■■□□ 16.5
ABCF1Q8NE71 TBRG4-204ENST00000461363 856 ntTSL 222.61■■□□□ 1.213e-32■■■□□ 16.5
ABCF1Q8NE71 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC22.52■■□□□ 1.23e-32■■■□□ 16.5
ABCF1Q8NE71 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.023e-32■■■□□ 16.5
ABCF1Q8NE71 TBRG4-209ENST00000478532 945 ntTSL 519.25■□□□□ 0.673e-32■■■□□ 16.5
ABCF1Q8NE71 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.653e-32■■■□□ 16.5
ABCF1Q8NE71 TBRG4-217ENST00000495973 3409 ntTSL 1 (best)14.41□□□□□ -0.13e-32■■■□□ 16.5
ABCF1Q8NE71 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC21.6■■□□□ 1.056e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-216ENST00000541416 996 ntTSL 218.98■□□□□ 0.636e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-221ENST00000544983 870 ntTSL 217.12■□□□□ 0.336e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-206ENST00000537925 1487 ntTSL 1 (best) BASIC16.84■□□□□ 0.296e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-215ENST00000540904 594 ntTSL 513.66□□□□□ -0.226e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC11.52□□□□□ -0.576e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-209ENST00000538654 2768 ntTSL 210.72□□□□□ -0.696e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC9.39□□□□□ -0.916e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-207ENST00000537965 578 ntTSL 58.22□□□□□ -1.096e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC8.13□□□□□ -1.116e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC7.53□□□□□ -1.26e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC7.36□□□□□ -1.236e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-214ENST00000540865 784 ntTSL 57.28□□□□□ -1.246e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-220ENST00000544550 636 ntTSL 26.48□□□□□ -1.376e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC6.42□□□□□ -1.386e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-224ENST00000545688 610 ntTSL 36.4□□□□□ -1.386e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC6.17□□□□□ -1.426e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-203ENST00000537024 532 ntTSL 55.95□□□□□ -1.466e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.3□□□□□ -1.566e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.23□□□□□ -1.576e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-222ENST00000545308 646 ntTSL 25.12□□□□□ -1.596e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-202ENST00000535689 550 ntTSL 24.43□□□□□ -1.76e-32■□□□□ 8.9
ABCF1Q8NE71 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.04□□□□□ -1.766e-32■□□□□ 8.9
ABCF1Q8NE71 SNORD28-201ENST00000384706 75 ntBASIC0.78□□□□□ -2.286e-32■□□□□ 8.9
ABCF1Q8NE71 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.392e-28■■□□□ 14
ABCF1Q8NE71 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.172e-28■■□□□ 14
ABCF1Q8NE71 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.822e-28■■□□□ 14
ABCF1Q8NE71 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.72e-28■■□□□ 14
ABCF1Q8NE71 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.72e-28■■□□□ 14
ABCF1Q8NE71 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.692e-28■■□□□ 14
ABCF1Q8NE71 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.742e-28■■□□□ 14
ABCF1Q8NE71 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.742e-28■■□□□ 14
ABCF1Q8NE71 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.582e-28■■□□□ 14
ABCF1Q8NE71 SNORD48-201ENST00000364953 64 ntBASIC2.22□□□□□ -2.052e-28■■□□□ 14
ABCF1Q8NE71 GAS5-209ENST00000430245 723 ntTSL 3 BASIC20.79■□□□□ 0.928e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC16.25■□□□□ 0.198e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-224ENST00000454068 688 ntTSL 5 BASIC14.36□□□□□ -0.118e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-216ENST00000443799 897 ntTSL 514.31□□□□□ -0.128e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-214ENST00000436656 822 ntTSL 314.31□□□□□ -0.128e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-203ENST00000416952 799 ntTSL 213.59□□□□□ -0.238e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-210ENST00000431268 1698 ntTSL 213.03□□□□□ -0.328e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-219ENST00000449289 542 ntTSL 3 BASIC11.92□□□□□ -0.58e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-220ENST00000449589 712 ntTSL 311.92□□□□□ -0.58e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-226ENST00000455838 632 ntTSL 211.92□□□□□ -0.58e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-227ENST00000456293 583 ntTSL 310.68□□□□□ -0.78e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-201ENST00000412059 979 ntTSL 58.39□□□□□ -1.078e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-204ENST00000421068 1060 ntTSL 27.26□□□□□ -1.258e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.65□□□□□ -1.58e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-229ENST00000458220 469 ntTSL 24.86□□□□□ -1.638e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.64□□□□□ -1.838e-26■□□□□ 9.5
ABCF1Q8NE71 GAS5-211ENST00000432536 959 ntTSL 2 BASIC11.11□□□□□ -0.632e-25■□□□□ 10.3
ABCF1Q8NE71 GAS5-228ENST00000456812 723 ntTSL 310.09□□□□□ -0.792e-25■□□□□ 10.3
ABCF1Q8NE71 GAS5-218ENST00000448718 565 ntTSL 2 BASIC8.9□□□□□ -0.982e-25■□□□□ 10.3
ABCF1Q8NE71 GAS5-206ENST00000422183 745 ntTSL 28.74□□□□□ -1.012e-25■□□□□ 10.3
ABCF1Q8NE71 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6.83□□□□□ -1.322e-25■□□□□ 10.3
ABCF1Q8NE71 GAS5-205ENST00000422008 497 ntTSL 36.71□□□□□ -1.342e-25■□□□□ 10.3
ABCF1Q8NE71 GAS5-215ENST00000442067 1114 ntTSL 26.2□□□□□ -1.422e-25■□□□□ 10.3
ABCF1Q8NE71 GAS5-213ENST00000436285 772 ntTSL 25□□□□□ -1.612e-25■□□□□ 10.3
ABCF1Q8NE71 ATG16L1-201ENST00000347464 2915 ntTSL 1 (best) BASIC15.84■□□□□ 0.132e-23■□□□□ 10.7
ABCF1Q8NE71 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC14.79□□□□□ -0.042e-23■□□□□ 10.7
ABCF1Q8NE71 ATG16L1-203ENST00000392017 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.162e-23■□□□□ 10.7
ABCF1Q8NE71 ATG16L1-211ENST00000464645 560 ntTSL 413.57□□□□□ -0.242e-23■□□□□ 10.7
ABCF1Q8NE71 ATG16L1-205ENST00000392020 3213 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.332e-23■□□□□ 10.7
ABCF1Q8NE71 ATG16L1-215ENST00000479942 3559 ntTSL 1 (best)12.91□□□□□ -0.342e-23■□□□□ 10.7
ABCF1Q8NE71 ATG16L1-218ENST00000498620 740 ntTSL 512.29□□□□□ -0.442e-23■□□□□ 10.7
ABCF1Q8NE71 ATG16L1-206ENST00000392021 3301 ntTSL 1 (best)12.29□□□□□ -0.442e-23■□□□□ 10.7
Retrieved 100 of 811 protein–RNA pairs in 22.7 ms