RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 NISCHQ9Y2I1 1504 aa35.43■■■■□ 3.26
SNHG1-213ENST00000540725 CCDC180Q9P1Z9 1646 aa31.82■■■□□ 2.68
SNHG1-213ENST00000540725 ABCC9O60706 1549 aa31.72■■■□□ 2.67
SNHG1-213ENST00000540725 RB1CC1Q8TDY2 1594 aa30.24■■■□□ 2.43
SNHG1-213ENST00000540725 NACADO15069 1562 aa30.03■■■□□ 2.4
SNHG1-213ENST00000540725 DCAF8L2P0C7V8 631 aa29.83■■■□□ 2.37
SNHG1-213ENST00000540725 DNAJC5BQ9UF47 199 aa29.66■■■□□ 2.34
SNHG1-213ENST00000540725 MYO15BQ96JP2 1530 aa29.63■■■□□ 2.33
SNHG1-213ENST00000540725 UNC13AQ9UPW8 1703 aa29.63■■■□□ 2.33
SNHG1-213ENST00000540725 PABPN1Q86U42 306 aaKnown RBP eCLIP29.51■■■□□ 2.31
SNHG1-213ENST00000540725 ZCCHC6Q5VYS8 1495 aaKnown RBP29.38■■■□□ 2.29
SNHG1-213ENST00000540725 BICRAQ9NZM4 1560 aa29.36■■■□□ 2.29
SNHG1-213ENST00000540725 DCAF1Q9Y4B6 1507 aa29.27■■■□□ 2.28
SNHG1-213ENST00000540725 SCRIBQ14160 1630 aa28.98■■■□□ 2.23
SNHG1-213ENST00000540725 SHROOM4Q9ULL8 1493 aa28.96■■■□□ 2.23
SNHG1-213ENST00000540725 CC2D2AQ9P2K1 1620 aa28.68■■■□□ 2.18
SNHG1-213ENST00000540725 EIF4G1Q04637 1599 aaKnown RBP28.62■■■□□ 2.17
SNHG1-213ENST00000540725 CECR2Q9BXF3 1484 aa28.57■■■□□ 2.16
SNHG1-213ENST00000540725 NCAPD3P42695 1498 aa27.7■■■□□ 2.03
SNHG1-213ENST00000540725 SMARCA4P51532 1647 aa27.65■■■□□ 2.02
SNHG1-213ENST00000540725 ATAD2BQ9ULI0 1458 aa27.63■■■□□ 2.01
SNHG1-213ENST00000540725 SMARCA2P51531 1590 aa27.58■■■□□ 2.01
SNHG1-213ENST00000540725 HMGXB3Q12766 1538 aa27.54■■■□□ 2
SNHG1-213ENST00000540725 BAZ1AQ9NRL2 1556 aaPredicted RBP27.51■■□□□ 1.99
SNHG1-213ENST00000540725 ERCC6Q03468 1493 aa27.39■■□□□ 1.98
SNHG1-213ENST00000540725 BAZ1BQ9UIG0 1483 aaKnown RBP27.38■■□□□ 1.97
SNHG1-213ENST00000540725 PEG3Q9GZU2 1588 aa27.38■■□□□ 1.97
SNHG1-213ENST00000540725 CUX2O14529 1486 aa27.32■■□□□ 1.96
SNHG1-213ENST00000540725 MROH2BQ7Z745 1585 aa27.3■■□□□ 1.96
SNHG1-213ENST00000540725 NESP48681 1621 aa27.27■■□□□ 1.96
SNHG1-213ENST00000540725 DNAJC5Q9H3Z4 198 aa27.21■■□□□ 1.95
SNHG1-213ENST00000540725 LAMC3Q9Y6N6 1575 aa27.11■■□□□ 1.93
SNHG1-213ENST00000540725 THOC2Q8NI27 1593 aaKnown RBP27.02■■□□□ 1.92
SNHG1-213ENST00000540725 WIZO95785 1651 aa27.01■■□□□ 1.91
SNHG1-213ENST00000540725 KIF21AQ7Z4S6 1674 aa26.98■■□□□ 1.91
SNHG1-213ENST00000540725 PDS5BQ9NTI5 1447 aa26.91■■□□□ 1.9
SNHG1-213ENST00000540725 CADPSQ9ULU8 1353 aa26.85■■□□□ 1.89
SNHG1-213ENST00000540725 RSF1Q96T23 1441 aaPredicted RBP26.73■■□□□ 1.87
SNHG1-213ENST00000540725 MRC2Q9UBG0 1479 aa26.69■■□□□ 1.86
SNHG1-213ENST00000540725 TOP2AP11388 1531 aaKnown RBP26.65■■□□□ 1.86
SNHG1-213ENST00000540725 WDR62O43379 1518 aa26.64■■□□□ 1.85
SNHG1-213ENST00000540725 CEP164Q9UPV0 1460 aa26.6■■□□□ 1.85
SNHG1-213ENST00000540725 CFTRP13569 1480 aa26.57■■□□□ 1.84
SNHG1-213ENST00000540725 FANCD2Q9BXW9 1451 aa26.57■■□□□ 1.84
SNHG1-213ENST00000540725 PRDM2Q13029 1718 aa26.42■■□□□ 1.82
SNHG1-213ENST00000540725 URB2Q14146 1524 aaKnown RBP26.36■■□□□ 1.81
SNHG1-213ENST00000540725 CCDC88BA6NC98 1476 aa26.33■■□□□ 1.81
SNHG1-213ENST00000540725 TOPBP1Q92547 1522 aa26.08■■□□□ 1.77
SNHG1-213ENST00000540725 IFT140Q96RY7 1462 aa26.06■■□□□ 1.76
SNHG1-213ENST00000540725 OSCARQ8IYS5 282 aa26.04■■□□□ 1.76
SNHG1-213ENST00000540725 TRIM41Q8WV44 630 aa26.04■■□□□ 1.76
SNHG1-213ENST00000540725 ZNF608Q9ULD9 1512 aaPredicted RBP26.02■■□□□ 1.76
SNHG1-213ENST00000540725 ABCC8Q09428 1581 aa26.02■■□□□ 1.76
SNHG1-213ENST00000540725 DNMBPQ6XZF7 1577 aa26.01■■□□□ 1.75
SNHG1-213ENST00000540725 EIF4G3O43432 1585 aaKnown RBP25.91■■□□□ 1.74
SNHG1-213ENST00000540725 TARBP1Q13395 1621 aaKnown RBP25.87■■□□□ 1.73
SNHG1-213ENST00000540725 POLA1P09884 1462 aaPredicted RBP25.82■■□□□ 1.72
SNHG1-213ENST00000540725 AQRO60306 1485 aaKnown RBP eCLIP25.78■■□□□ 1.723e-14■■■■■ 46.6
SNHG1-213ENST00000540725 RIMBP3CA6NJZ7 1639 aa25.77■■□□□ 1.72
SNHG1-213ENST00000540725 RIMBP3BA6NNM3 1639 aa25.77■■□□□ 1.72
SNHG1-213ENST00000540725 RIMBP3Q9UFD9 1639 aa25.77■■□□□ 1.72
SNHG1-213ENST00000540725 CHD1O14646 1710 aa25.74■■□□□ 1.71
SNHG1-213ENST00000540725 RAD54L2Q9Y4B4 1467 aa25.71■■□□□ 1.71
SNHG1-213ENST00000540725 SOGA1O94964 1423 aa25.68■■□□□ 1.7
SNHG1-213ENST00000540725 ARHGEF11O15085 1522 aa25.68■■□□□ 1.7
SNHG1-213ENST00000540725 FGD5Q6ZNL6 1462 aa25.67■■□□□ 1.7
SNHG1-213ENST00000540725 CUX1P39880 1505 aa25.65■■□□□ 1.7
SNHG1-213ENST00000540725 TDRD9Q8NDG6 1382 aaKnown RBP25.61■■□□□ 1.69
SNHG1-213ENST00000540725 WDR97A6NE52 1622 aa25.61■■□□□ 1.69
SNHG1-213ENST00000540725 FBLN2P98095 1184 aa25.58■■□□□ 1.69
SNHG1-213ENST00000540725 SUPT5HO00267 1087 aaKnown RBP25.57■■□□□ 1.68
SNHG1-213ENST00000540725 SNAPC4Q5SXM2 1469 aa25.53■■□□□ 1.68
SNHG1-213ENST00000540725 MAGI1Q96QZ7 1491 aaPredicted RBP25.47■■□□□ 1.67
SNHG1-213ENST00000540725 GRIN2BQ13224 1484 aa25.47■■□□□ 1.67
SNHG1-213ENST00000540725 PBRM1Q86U86 1689 aa25.44■■□□□ 1.66
SNHG1-213ENST00000540725 CYB5RLQ6IPT4 315 aa25.44■■□□□ 1.66
SNHG1-213ENST00000540725 ARAP1Q96P48 1450 aa25.42■■□□□ 1.66
SNHG1-213ENST00000540725 CLASP1Q7Z460 1538 aa25.41■■□□□ 1.66
SNHG1-213ENST00000540725 CHMP7Q8WUX9 453 aaPredicted RBP25.4■■□□□ 1.66
SNHG1-213ENST00000540725 SYNJ1O43426 1573 aa25.39■■□□□ 1.66
SNHG1-213ENST00000540725 SYNJ2O15056 1496 aa25.38■■□□□ 1.65
SNHG1-213ENST00000540725 GAPVD1Q14C86 1478 aa25.38■■□□□ 1.65
SNHG1-213ENST00000540725 ABCA10Q8WWZ4 1543 aa25.37■■□□□ 1.65
SNHG1-213ENST00000540725 ABCA5Q8WWZ7 1642 aa25.36■■□□□ 1.65
SNHG1-213ENST00000540725 BIVM-ERCC5R4GMW8 1640 aa25.29■■□□□ 1.64
SNHG1-213ENST00000540725 TOP2BQ02880 1626 aa25.28■■□□□ 1.64
SNHG1-213ENST00000540725 WRNQ14191 1432 aaPredicted RBP eCLIP25.26■■□□□ 1.63
SNHG1-213ENST00000540725 ADAMTS12P58397 1594 aa25.16■■□□□ 1.62
SNHG1-213ENST00000540725 GRIN2AQ12879 1464 aa25.14■■□□□ 1.62
SNHG1-213ENST00000540725 TRHP20396 242 aaPredicted RBP25.14■■□□□ 1.61
SNHG1-213ENST00000540725 ERICH3Q5RHP9 1530 aa25.06■■□□□ 1.6
SNHG1-213ENST00000540725 CEP170Q5SW79 1584 aa25.06■■□□□ 1.6
SNHG1-213ENST00000540725 FHAD1B1AJZ9 1412 aa25.06■■□□□ 1.6
SNHG1-213ENST00000540725 NUP160Q12769 1436 aa25.05■■□□□ 1.6
SNHG1-213ENST00000540725 ERCC6L2Q5T890 1561 aa25■■□□□ 1.59
SNHG1-213ENST00000540725 SHROOM2Q13796 1616 aa24.97■■□□□ 1.59
SNHG1-213ENST00000540725 RUSC2Q8N2Y8 1516 aa24.81■■□□□ 1.56
SNHG1-213ENST00000540725 PRG4Q92954 1404 aaPredicted RBP24.8■■□□□ 1.56
SNHG1-213ENST00000540725 JPH4Q96JJ6 628 aa24.76■■□□□ 1.55
SNHG1-213ENST00000540725 KIF27Q86VH2 1401 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms