RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-223ENST00000545440 CHIC1Q5VXU3 224 aa22.67■■□□□ 1.22
SNHG1-223ENST00000545440 AEBP2Q6ZN18 517 aaPredicted RBP22.67■■□□□ 1.22
SNHG1-223ENST00000545440 PHF23Q9BUL5 403 aaPredicted RBP19.83■□□□□ 0.77
SNHG1-223ENST00000545440 SENP3Q9H4L4 574 aaPredicted RBP19.46■□□□□ 0.71
SNHG1-223ENST00000545440 NISCHQ9Y2I1 1504 aa19.05■□□□□ 0.64
SNHG1-223ENST00000545440 PLPPR3Q6T4P5 718 aa18.71■□□□□ 0.59
SNHG1-223ENST00000545440 FOXD1Q16676 465 aa17.84■□□□□ 0.45
SNHG1-223ENST00000545440 ADRA2BP18089 450 aa17.47■□□□□ 0.39
SNHG1-223ENST00000545440 PPP6R1Q9UPN7 881 aa17.37■□□□□ 0.37
SNHG1-223ENST00000545440 CCDC180Q9P1Z9 1646 aa17.15■□□□□ 0.34
SNHG1-223ENST00000545440 PIAS4Q8N2W9 510 aaPredicted RBP17.06■□□□□ 0.32
SNHG1-223ENST00000545440 ABCC9O60706 1549 aa16.71■□□□□ 0.27
SNHG1-223ENST00000545440 MSH5O43196 834 aa16.52■□□□□ 0.24
SNHG1-223ENST00000545440 PPP4R3CPQ6ZMV5 832 aa16.46■□□□□ 0.23
SNHG1-223ENST00000545440 KCNA4P22459 653 aa16.42■□□□□ 0.22
SNHG1-223ENST00000545440 NCBP3Q53F19 620 aaKnown RBP16.33■□□□□ 0.2
SNHG1-223ENST00000545440 SCAF1Q9H7N4 1312 aaKnown RBP16.29■□□□□ 0.2
SNHG1-223ENST00000545440 RB1CC1Q8TDY2 1594 aa16.13■□□□□ 0.17
SNHG1-223ENST00000545440 NACADO15069 1562 aa16.07■□□□□ 0.16
SNHG1-223ENST00000545440 CNKSR2Q8WXI2 1034 aa15.97■□□□□ 0.15
SNHG1-223ENST00000545440 MYO15BQ96JP2 1530 aa15.94■□□□□ 0.14
SNHG1-223ENST00000545440 UNC13AQ9UPW8 1703 aa15.89■□□□□ 0.13
SNHG1-223ENST00000545440 ZCCHC6Q5VYS8 1495 aaKnown RBP15.87■□□□□ 0.13
SNHG1-223ENST00000545440 NPM3O75607 178 aaKnown RBP15.84■□□□□ 0.13
SNHG1-223ENST00000545440 SLC4A1APQ9BWU0 796 aaKnown RBP15.84■□□□□ 0.13
SNHG1-223ENST00000545440 DCAF1Q9Y4B6 1507 aa15.81■□□□□ 0.12
SNHG1-223ENST00000545440 EHMT2Q96KQ7 1210 aa15.79■□□□□ 0.12
SNHG1-223ENST00000545440 DCAF8L2P0C7V8 631 aa15.75■□□□□ 0.11
SNHG1-223ENST00000545440 MAPK8IP2Q13387 824 aaPredicted RBP15.68■□□□□ 0.1
SNHG1-223ENST00000545440 BICRAQ9NZM4 1560 aa15.63■□□□□ 0.09
SNHG1-223ENST00000545440 RNF216Q9NWF9 866 aaPredicted RBP15.55■□□□□ 0.08
SNHG1-223ENST00000545440 SCRIBQ14160 1630 aa15.52■□□□□ 0.08
SNHG1-223ENST00000545440 DMRT2Q9Y5R5 561 aa15.51■□□□□ 0.07
SNHG1-223ENST00000545440 SHROOM4Q9ULL8 1493 aa15.51■□□□□ 0.07
SNHG1-223ENST00000545440 PABPN1Q86U42 306 aaKnown RBP eCLIP15.49■□□□□ 0.07
SNHG1-223ENST00000545440 DNAJC5BQ9UF47 199 aa15.37■□□□□ 0.05
SNHG1-223ENST00000545440 HOXD11P31277 338 aaPredicted RBP15.31■□□□□ 0.04
SNHG1-223ENST00000545440 CSRNP3Q8WYN3 585 aa15.31■□□□□ 0.04
SNHG1-223ENST00000545440 EIF4G1Q04637 1599 aaKnown RBP15.23■□□□□ 0.03
SNHG1-223ENST00000545440 CC2D2AQ9P2K1 1620 aa15.21■□□□□ 0.02
SNHG1-223ENST00000545440 FOXD4L1Q9NU39 408 aa15.12■□□□□ 0.01
SNHG1-223ENST00000545440 CECR2Q9BXF3 1484 aa15.06■□□□□ 0
SNHG1-223ENST00000545440 ZBTB22O15209 634 aa14.99□□□□□ -0.01
SNHG1-223ENST00000545440 DCAF8L1A6NGE4 600 aa14.98□□□□□ -0.01
SNHG1-223ENST00000545440 SMARCA4P51532 1647 aa14.87□□□□□ -0.03
SNHG1-223ENST00000545440 BAZ1AQ9NRL2 1556 aaPredicted RBP14.81□□□□□ -0.04
SNHG1-223ENST00000545440 SMARCA2P51531 1590 aa14.78□□□□□ -0.04
SNHG1-223ENST00000545440 SLC4A2P04920 1241 aa14.78□□□□□ -0.04
SNHG1-223ENST00000545440 MYCNP04198 464 aaPredicted RBP14.76□□□□□ -0.05
SNHG1-223ENST00000545440 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.76□□□□□ -0.05
SNHG1-223ENST00000545440 HMGXB3Q12766 1538 aa14.76□□□□□ -0.05
SNHG1-223ENST00000545440 NCAPD3P42695 1498 aa14.76□□□□□ -0.05
SNHG1-223ENST00000545440 PEG3Q9GZU2 1588 aa14.75□□□□□ -0.05
SNHG1-223ENST00000545440 ATAD2BQ9ULI0 1458 aa14.74□□□□□ -0.05
SNHG1-223ENST00000545440 MROH2BQ7Z745 1585 aa14.65□□□□□ -0.06
SNHG1-223ENST00000545440 BAZ1BQ9UIG0 1483 aaKnown RBP14.63□□□□□ -0.07
SNHG1-223ENST00000545440 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.62□□□□□ -0.07
SNHG1-223ENST00000545440 HNRNPUL2Q1KMD3 747 aaKnown RBP14.62□□□□□ -0.07
SNHG1-223ENST00000545440 ATXN8OSP0DMR3 200 aa14.61□□□□□ -0.07
SNHG1-223ENST00000545440 WIZO95785 1651 aa14.54□□□□□ -0.08
SNHG1-223ENST00000545440 SAMD1Q6SPF0 538 aaPredicted RBP14.51□□□□□ -0.09
SNHG1-223ENST00000545440 LAMC3Q9Y6N6 1575 aa14.47□□□□□ -0.09
SNHG1-223ENST00000545440 APLP2Q06481 763 aa14.45□□□□□ -0.1
SNHG1-223ENST00000545440 ERCC6Q03468 1493 aa14.44□□□□□ -0.1
SNHG1-223ENST00000545440 NESP48681 1621 aa14.43□□□□□ -0.1
SNHG1-223ENST00000545440 KIF21AQ7Z4S6 1674 aa14.4□□□□□ -0.1
SNHG1-223ENST00000545440 RSF1Q96T23 1441 aaPredicted RBP14.4□□□□□ -0.1
SNHG1-223ENST00000545440 CUX2O14529 1486 aa14.39□□□□□ -0.11
SNHG1-223ENST00000545440 TOP2AP11388 1531 aaKnown RBP14.39□□□□□ -0.11
SNHG1-223ENST00000545440 U3KPZ7 1027 aaPredicted RBP14.37□□□□□ -0.11
SNHG1-223ENST00000545440 THOC2Q8NI27 1593 aaKnown RBP14.37□□□□□ -0.11
SNHG1-223ENST00000545440 PRDM2Q13029 1718 aa14.34□□□□□ -0.11
SNHG1-223ENST00000545440 PDS5BQ9NTI5 1447 aa14.28□□□□□ -0.12
SNHG1-223ENST00000545440 CADPSQ9ULU8 1353 aa14.28□□□□□ -0.12
SNHG1-223ENST00000545440 CFTRP13569 1480 aa14.21□□□□□ -0.13
SNHG1-223ENST00000545440 POTEDQ86YR6 584 aa14.2□□□□□ -0.14
SNHG1-223ENST00000545440 WDR62O43379 1518 aa14.2□□□□□ -0.14
SNHG1-223ENST00000545440 MRC2Q9UBG0 1479 aa14.18□□□□□ -0.14
SNHG1-223ENST00000545440 CEP164Q9UPV0 1460 aa14.18□□□□□ -0.14
SNHG1-223ENST00000545440 FANCD2Q9BXW9 1451 aa14.16□□□□□ -0.14
SNHG1-223ENST00000545440 CCDC88BA6NC98 1476 aa14.12□□□□□ -0.15
SNHG1-223ENST00000545440 ATF5Q9Y2D1 282 aaPredicted RBP14.1□□□□□ -0.15
SNHG1-223ENST00000545440 RNF39Q9H2S5 420 aa14.04□□□□□ -0.16
SNHG1-223ENST00000545440 ZNF219Q9P2Y4 722 aaPredicted RBP14.04□□□□□ -0.16
SNHG1-223ENST00000545440 URB2Q14146 1524 aaKnown RBP14.04□□□□□ -0.16
SNHG1-223ENST00000545440 C1QBPQ07021 282 aaKnown RBP14.02□□□□□ -0.17
SNHG1-223ENST00000545440 DNAJC5Q9H3Z4 198 aa13.99□□□□□ -0.17
SNHG1-223ENST00000545440 CAPN15O75808 1086 aa13.96□□□□□ -0.17
SNHG1-223ENST00000545440 TRHP20396 242 aaPredicted RBP13.96□□□□□ -0.17
SNHG1-223ENST00000545440 FKBP8Q14318 412 aa13.95□□□□□ -0.18
SNHG1-223ENST00000545440 DNMBPQ6XZF7 1577 aa13.95□□□□□ -0.18
SNHG1-223ENST00000545440 ABCC8Q09428 1581 aa13.94□□□□□ -0.18
SNHG1-223ENST00000545440 TOPBP1Q92547 1522 aa13.94□□□□□ -0.18
SNHG1-223ENST00000545440 IFT140Q96RY7 1462 aa13.87□□□□□ -0.19
SNHG1-223ENST00000545440 TARBP1Q13395 1621 aaKnown RBP13.85□□□□□ -0.19
SNHG1-223ENST00000545440 EIF4G3O43432 1585 aaKnown RBP13.84□□□□□ -0.19
SNHG1-223ENST00000545440 FBLN2P98095 1184 aa13.84□□□□□ -0.19
SNHG1-223ENST00000545440 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
SNHG1-223ENST00000545440 POLA1P09884 1462 aaPredicted RBP13.8□□□□□ -0.2
SNHG1-223ENST00000545440 ZNF608Q9ULD9 1512 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms