Protein–RNA interactions for Protein: Q8NE71

ABCF1, ATP-binding cassette sub-family F member 1, humanhuman

Known RBP eCLIP

Length 845 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1Q8NE71 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC49.98■■■■■ 5.59not detected
ABCF1Q8NE71 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC49.65■■■■■ 5.54not detected
ABCF1Q8NE71 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC48.94■■■■■ 5.43not detected
ABCF1Q8NE71 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC48.78■■■■■ 5.4not detected
ABCF1Q8NE71 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC48.3■■■■■ 5.325e-7■□□□□ 10
ABCF1Q8NE71 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC47.97■■■■■ 5.27not detected
ABCF1Q8NE71 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC47.78■■■■■ 5.24not detected
ABCF1Q8NE71 AL356512.1-201ENST00000607453 1739 ntBASIC47.56■■■■■ 5.2not detected
ABCF1Q8NE71 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC47.5■■■■■ 5.19not detected
ABCF1Q8NE71 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC47.28■■■■■ 5.16not detected
ABCF1Q8NE71 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC47.09■■■■■ 5.13not detected
ABCF1Q8NE71 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC47.04■■■■■ 5.12not detected
ABCF1Q8NE71 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC47.01■■■■■ 5.12not detected
ABCF1Q8NE71 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC46.92■■■■■ 5.1not detected
ABCF1Q8NE71 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC46.58■■■■■ 5.05not detected
ABCF1Q8NE71 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC46.56■■■■■ 5.04not detected
ABCF1Q8NE71 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC46.47■■■■■ 5.03not detected
ABCF1Q8NE71 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC46.45■■■■■ 5.03not detected
ABCF1Q8NE71 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC46.43■■■■■ 5.02not detected
ABCF1Q8NE71 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC45.94■■■■■ 4.94not detected
ABCF1Q8NE71 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC45.94■■■■■ 4.94not detected
ABCF1Q8NE71 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC45.86■■■■■ 4.93not detected
ABCF1Q8NE71 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC45.84■■■■■ 4.93not detected
ABCF1Q8NE71 HES6-203ENST00000409160 1600 ntTSL 2 BASIC45.84■■■■■ 4.933e-7■□□□□ 9.9
ABCF1Q8NE71 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC45.75■■■■■ 4.91not detected
ABCF1Q8NE71 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC45.75■■■■■ 4.91not detected
ABCF1Q8NE71 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC45.6■■■■■ 4.89not detected
ABCF1Q8NE71 INO80B-203ENST00000409917 796 ntTSL 2 BASIC45.57■■■■■ 4.89not detected
ABCF1Q8NE71 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC45.55■■■■■ 4.88not detected
ABCF1Q8NE71 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC45.5■■■■■ 4.87not detected
ABCF1Q8NE71 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC45.44■■■■■ 4.87not detected
ABCF1Q8NE71 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC45.24■■■■■ 4.83not detected
ABCF1Q8NE71 AC006077.2-201ENST00000623591 457 ntBASIC45.23■■■■■ 4.83not detected
ABCF1Q8NE71 ZNRF2P1-201ENST00000441407 443 ntBASIC45.21■■■■■ 4.83not detected
ABCF1Q8NE71 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC45.1■■■■■ 4.81not detected
ABCF1Q8NE71 AC015813.7-201ENST00000623294 581 ntBASIC44.92■■■■■ 4.78not detected
ABCF1Q8NE71 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC44.89■■■■■ 4.78not detected
ABCF1Q8NE71 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC44.85■■■■■ 4.77not detected
ABCF1Q8NE71 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC44.64■■■■■ 4.74not detected
ABCF1Q8NE71 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC44.64■■■■■ 4.74not detected
ABCF1Q8NE71 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC44.43■■■■■ 4.7not detected
ABCF1Q8NE71 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC44.19■■■■■ 4.66not detected
ABCF1Q8NE71 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC44.13■■■■■ 4.65not detected
ABCF1Q8NE71 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC44.13■■■■■ 4.65not detected
ABCF1Q8NE71 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC44.12■■■■■ 4.65not detected
ABCF1Q8NE71 AP002365.1-201ENST00000603448 772 ntBASIC44.05■■■■■ 4.64not detected
ABCF1Q8NE71 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC44■■■■■ 4.63not detected
ABCF1Q8NE71 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC43.9■■■■■ 4.62not detected
ABCF1Q8NE71 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC43.82■■■■■ 4.61not detected
ABCF1Q8NE71 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC43.8■■■■■ 4.6not detected
ABCF1Q8NE71 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC43.73■■■■■ 4.59not detected
ABCF1Q8NE71 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC43.73■■■■■ 4.59not detected
ABCF1Q8NE71 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC43.7■■■■■ 4.59not detected
ABCF1Q8NE71 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC43.69■■■■■ 4.58not detected
ABCF1Q8NE71 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC43.69■■■■■ 4.58not detected
ABCF1Q8NE71 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC43.65■■■■■ 4.58not detected
ABCF1Q8NE71 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC43.65■■■■■ 4.58not detected
ABCF1Q8NE71 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC43.62■■■■■ 4.57not detected
ABCF1Q8NE71 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC43.53■■■■■ 4.56not detected
ABCF1Q8NE71 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC43.52■■■■■ 4.56not detected
ABCF1Q8NE71 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC43.52■■■■■ 4.56not detected
ABCF1Q8NE71 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC43.5■■■■■ 4.55not detected
ABCF1Q8NE71 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC43.47■■■■■ 4.55not detected
ABCF1Q8NE71 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC43.44■■■■■ 4.54not detected
ABCF1Q8NE71 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC43.37■■■■■ 4.53not detected
ABCF1Q8NE71 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC43.31■■■■■ 4.52not detected
ABCF1Q8NE71 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC43.27■■■■■ 4.52not detected
ABCF1Q8NE71 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC43.24■■■■■ 4.51not detected
ABCF1Q8NE71 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC43.21■■■■■ 4.51not detected
ABCF1Q8NE71 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC43.2■■■■■ 4.51not detected
ABCF1Q8NE71 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC43.14■■■■■ 4.5not detected
ABCF1Q8NE71 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC43.09■■■■■ 4.49not detected
ABCF1Q8NE71 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC43.07■■■■■ 4.49not detected
ABCF1Q8NE71 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC43.05■■■■■ 4.48not detected
ABCF1Q8NE71 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC43.05■■■■■ 4.48not detected
ABCF1Q8NE71 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC43.01■■■■■ 4.48not detected
ABCF1Q8NE71 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC43■■■■■ 4.47not detected
ABCF1Q8NE71 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC42.99■■■■■ 4.47not detected
ABCF1Q8NE71 DYNLL1-208ENST00000550178 581 ntBASIC42.99■■■■■ 4.47not detected
ABCF1Q8NE71 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC42.98■■■■■ 4.47not detected
ABCF1Q8NE71 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC42.97■■■■■ 4.47not detected
ABCF1Q8NE71 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC42.95■■■■■ 4.47not detected
ABCF1Q8NE71 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC42.93■■■■■ 4.46not detected
ABCF1Q8NE71 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC42.87■■■■■ 4.45not detected
ABCF1Q8NE71 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC42.83■■■■■ 4.45not detected
ABCF1Q8NE71 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC42.8■■■■■ 4.44not detected
ABCF1Q8NE71 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC42.77■■■■■ 4.44not detected
ABCF1Q8NE71 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC42.74■■■■■ 4.43not detected
ABCF1Q8NE71 AL031258.1-201ENST00000623562 325 ntBASIC42.7■■■■■ 4.43not detected
ABCF1Q8NE71 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC42.66■■■■■ 4.42not detected
ABCF1Q8NE71 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC42.64■■■■■ 4.42not detected
ABCF1Q8NE71 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC42.61■■■■■ 4.41not detected
ABCF1Q8NE71 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC42.58■■■■■ 4.41not detected
ABCF1Q8NE71 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC42.57■■■■■ 4.4not detected
ABCF1Q8NE71 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC42.55■■■■■ 4.4not detected
ABCF1Q8NE71 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC42.5■■■■■ 4.39not detected
ABCF1Q8NE71 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC42.49■■■■■ 4.39not detected
ABCF1Q8NE71 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC42.48■■■■■ 4.39not detected
ABCF1Q8NE71 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC42.48■■■■■ 4.39not detected
ABCF1Q8NE71 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC42.47■■■■■ 4.39not detected
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms