RNA–Protein interactions for RNA: ENST00000545688.5

SNHG1-224, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3

Gene SNHG1, Length 610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-224ENST00000545688 AEBP2Q6ZN18 517 aaPredicted RBP30.62■■■□□ 2.49
SNHG1-224ENST00000545688 CHIC1Q5VXU3 224 aa29.52■■■□□ 2.32
SNHG1-224ENST00000545688 SENP3Q9H4L4 574 aaPredicted RBP26■■□□□ 1.75
SNHG1-224ENST00000545688 PHF23Q9BUL5 403 aaPredicted RBP25.94■■□□□ 1.74
SNHG1-224ENST00000545688 FOXD1Q16676 465 aa24.21■■□□□ 1.47
SNHG1-224ENST00000545688 PLPPR3Q6T4P5 718 aa23.79■■□□□ 1.4
SNHG1-224ENST00000545688 PPP6R1Q9UPN7 881 aa23.01■■□□□ 1.27
SNHG1-224ENST00000545688 ADRA2BP18089 450 aa22.98■■□□□ 1.27
SNHG1-224ENST00000545688 PIAS4Q8N2W9 510 aaPredicted RBP22.73■■□□□ 1.23
SNHG1-224ENST00000545688 MSH5O43196 834 aa22.43■■□□□ 1.18
SNHG1-224ENST00000545688 POTEDQ86YR6 584 aa21.11■□□□□ 0.97
SNHG1-224ENST00000545688 MAPK8IP2Q13387 824 aaPredicted RBP20.96■□□□□ 0.95
SNHG1-224ENST00000545688 SCAF1Q9H7N4 1312 aaKnown RBP20.96■□□□□ 0.95
SNHG1-224ENST00000545688 PPP4R3CPQ6ZMV5 832 aa20.94■□□□□ 0.94
SNHG1-224ENST00000545688 DMRT2Q9Y5R5 561 aa20.7■□□□□ 0.9
SNHG1-224ENST00000545688 CNKSR2Q8WXI2 1034 aa20.41■□□□□ 0.86
SNHG1-224ENST00000545688 NCBP3Q53F19 620 aaKnown RBP20.24■□□□□ 0.83
SNHG1-224ENST00000545688 HOXD11P31277 338 aaPredicted RBP20.13■□□□□ 0.81
SNHG1-224ENST00000545688 RNF216Q9NWF9 866 aaPredicted RBP20.1■□□□□ 0.81
SNHG1-224ENST00000545688 KCNA4P22459 653 aa20.05■□□□□ 0.8
SNHG1-224ENST00000545688 NPM3O75607 178 aaKnown RBP19.98■□□□□ 0.79
SNHG1-224ENST00000545688 DCAF8L1A6NGE4 600 aa19.85■□□□□ 0.77
SNHG1-224ENST00000545688 DNAJC5BQ9UF47 199 aa19.41■□□□□ 0.7
SNHG1-224ENST00000545688 RNF39Q9H2S5 420 aa19.2■□□□□ 0.66
SNHG1-224ENST00000545688 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.18■□□□□ 0.66
SNHG1-224ENST00000545688 SLC4A1APQ9BWU0 796 aaKnown RBP19.01■□□□□ 0.63
SNHG1-224ENST00000545688 CACNB1Q02641 598 aaPredicted RBP18.98■□□□□ 0.63
SNHG1-224ENST00000545688 SLC4A2P04920 1241 aa18.97■□□□□ 0.63
SNHG1-224ENST00000545688 C1QBPQ07021 282 aaKnown RBP18.92■□□□□ 0.62
SNHG1-224ENST00000545688 U3KPZ7 1027 aaPredicted RBP18.86■□□□□ 0.61
SNHG1-224ENST00000545688 FOXD4L1Q9NU39 408 aa18.53■□□□□ 0.56
SNHG1-224ENST00000545688 MYCNP04198 464 aaPredicted RBP18.46■□□□□ 0.55
SNHG1-224ENST00000545688 ZBTB22O15209 634 aa18.45■□□□□ 0.54
SNHG1-224ENST00000545688 SPINK5Q9NQ38 1064 aaPredicted RBP18.45■□□□□ 0.54
SNHG1-224ENST00000545688 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.43■□□□□ 0.54
SNHG1-224ENST00000545688 HNRNPUL2Q1KMD3 747 aaKnown RBP18.43■□□□□ 0.54
SNHG1-224ENST00000545688 CAPN15O75808 1086 aa18.38■□□□□ 0.53
SNHG1-224ENST00000545688 SAMD1Q6SPF0 538 aaPredicted RBP18.36■□□□□ 0.53
SNHG1-224ENST00000545688 APLP2Q06481 763 aa18.32■□□□□ 0.52
SNHG1-224ENST00000545688 TRHP20396 242 aaPredicted RBP18.2■□□□□ 0.5
SNHG1-224ENST00000545688 ZNF219Q9P2Y4 722 aaPredicted RBP18.16■□□□□ 0.5
SNHG1-224ENST00000545688 DSG3P32926 999 aa18.15■□□□□ 0.5
SNHG1-224ENST00000545688 EHMT2Q96KQ7 1210 aa18.06■□□□□ 0.48
SNHG1-224ENST00000545688 ATF5Q9Y2D1 282 aaPredicted RBP18.03■□□□□ 0.48
SNHG1-224ENST00000545688 CSRNP3Q8WYN3 585 aa18.02■□□□□ 0.48
SNHG1-224ENST00000545688 ABCB7O75027 752 aa18.01■□□□□ 0.47
SNHG1-224ENST00000545688 ATXN8OSP0DMR3 200 aa17.89■□□□□ 0.45
SNHG1-224ENST00000545688 POLA2Q14181 598 aa17.81■□□□□ 0.44
SNHG1-224ENST00000545688 ZBTB12Q9Y330 459 aaPredicted RBP17.46■□□□□ 0.39
SNHG1-224ENST00000545688 RBM42Q9BTD8 480 aaKnown RBP17.28■□□□□ 0.36
SNHG1-224ENST00000545688 FBLN2P98095 1184 aa17.25■□□□□ 0.35
SNHG1-224ENST00000545688 OSCARQ8IYS5 282 aa17.25■□□□□ 0.35
SNHG1-224ENST00000545688 MKRN4PQ13434 485 aaPredicted RBP17.22■□□□□ 0.35
SNHG1-224ENST00000545688 AKT1S1Q96B36 256 aa16.99■□□□□ 0.31
SNHG1-224ENST00000545688 SPDYE2BA6NHP3 402 aa16.97■□□□□ 0.31
SNHG1-224ENST00000545688 SPDYE6P0CI01 402 aa16.97■□□□□ 0.31
SNHG1-224ENST00000545688 SPDYE2Q495Y8 402 aa16.97■□□□□ 0.31
SNHG1-224ENST00000545688 ZNF692Q9BU19 519 aaPredicted RBP16.86■□□□□ 0.29
SNHG1-224ENST00000545688 REM2Q8IYK8 340 aaPredicted RBP16.85■□□□□ 0.29
SNHG1-224ENST00000545688 SSUH2Q9Y2M2 353 aa16.82■□□□□ 0.28
SNHG1-224ENST00000545688 CHRDL2Q6WN34 429 aa16.73■□□□□ 0.27
SNHG1-224ENST00000545688 PITPNM1O00562 1244 aa16.68■□□□□ 0.26
SNHG1-224ENST00000545688 PABPN1Q86U42 306 aaKnown RBP eCLIP16.64■□□□□ 0.25
SNHG1-224ENST00000545688 SPDYE4A6NLX3 237 aa16.63■□□□□ 0.25
SNHG1-224ENST00000545688 POTEHQ6S545 545 aa16.63■□□□□ 0.25
SNHG1-224ENST00000545688 SPDYE1Q8NFV5 336 aaPredicted RBP16.56■□□□□ 0.24
SNHG1-224ENST00000545688 CLEC11AQ9Y240 323 aa16.53■□□□□ 0.24
SNHG1-224ENST00000545688 PIP4P2Q8N4L2 257 aa16.45■□□□□ 0.22
SNHG1-224ENST00000545688 FXR2P51116 673 aaKnown RBP eCLIP16.42■□□□□ 0.22
SNHG1-224ENST00000545688 FKBP8Q14318 412 aa16.32■□□□□ 0.2
SNHG1-224ENST00000545688 PRR29P0C7W0 189 aa16.31■□□□□ 0.2
SNHG1-224ENST00000545688 PROM2Q8N271 834 aa16.3■□□□□ 0.2
SNHG1-224ENST00000545688 PRKAR2AP13861 404 aaKnown RBP16.25■□□□□ 0.19
SNHG1-224ENST00000545688 STAG3Q9UJ98 1225 aa16.24■□□□□ 0.19
SNHG1-224ENST00000545688 CHADLQ6NUI6 762 aa16.19■□□□□ 0.18
SNHG1-224ENST00000545688 CREBZFQ9NS37 354 aa16.04■□□□□ 0.16
SNHG1-224ENST00000545688 HAX1O00165 279 aa16.01■□□□□ 0.15
SNHG1-224ENST00000545688 FARP1Q9Y4F1 1045 aaPredicted RBP15.97■□□□□ 0.15
SNHG1-224ENST00000545688 C19orf67A6NJJ6 358 aa15.88■□□□□ 0.13
SNHG1-224ENST00000545688 EVX2Q03828 476 aa15.88■□□□□ 0.13
SNHG1-224ENST00000545688 MNX1P50219 401 aaPredicted RBP15.83■□□□□ 0.12
SNHG1-224ENST00000545688 MIER1Q8N108 512 aa15.81■□□□□ 0.12
SNHG1-224ENST00000545688 SP7Q8TDD2 431 aaPredicted RBP15.81■□□□□ 0.12
SNHG1-224ENST00000545688 FBXO3Q9UK99 471 aa15.79■□□□□ 0.12
SNHG1-224ENST00000545688 CD44P16070 742 aaKnown RBP15.76■□□□□ 0.11
SNHG1-224ENST00000545688 PLCD3Q8N3E9 789 aa15.74■□□□□ 0.11
SNHG1-224ENST00000545688 PLEKHG5O94827 1062 aa15.72■□□□□ 0.11
SNHG1-224ENST00000545688 NPM1P06748 294 aaKnown RBP eCLIP15.72■□□□□ 0.11
SNHG1-224ENST00000545688 VASPP50552 380 aaPredicted RBP15.62■□□□□ 0.09
SNHG1-224ENST00000545688 ZRANB1Q9UGI0 708 aa15.62■□□□□ 0.09
SNHG1-224ENST00000545688 PAK3O75914 559 aaPredicted RBP15.56■□□□□ 0.08
SNHG1-224ENST00000545688 ZBTB47Q9UFB7 747 aaPredicted RBP15.56■□□□□ 0.08
SNHG1-224ENST00000545688 GABBR2O75899 941 aa15.53■□□□□ 0.08
SNHG1-224ENST00000545688 ZNF579Q8NAF0 562 aaKnown RBP15.53■□□□□ 0.08
SNHG1-224ENST00000545688 TSPYL2Q9H2G4 693 aaPredicted RBP15.5■□□□□ 0.07
SNHG1-224ENST00000545688 RASEFQ8IZ41 740 aa15.49■□□□□ 0.07
SNHG1-224ENST00000545688 NUBP1P53384 320 aa15.46■□□□□ 0.07
SNHG1-224ENST00000545688 PHF12Q96QT6 1004 aa15.46■□□□□ 0.07
SNHG1-224ENST00000545688 KLHL34Q8N239 644 aa15.43■□□□□ 0.06
SNHG1-224ENST00000545688 CLCN6P51797 869 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms