RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 NISCHQ9Y2I1 1504 aa27.94■■■□□ 2.06
SNHG1-221ENST00000544983 CCDC180Q9P1Z9 1646 aa24.74■■□□□ 1.55
SNHG1-221ENST00000544983 ABCC9O60706 1549 aa23.84■■□□□ 1.41
SNHG1-221ENST00000544983 ZCCHC6Q5VYS8 1495 aaKnown RBP23.33■■□□□ 1.33
SNHG1-221ENST00000544983 MYO15BQ96JP2 1530 aa23.23■■□□□ 1.31
SNHG1-221ENST00000544983 NACADO15069 1562 aa23.23■■□□□ 1.31
SNHG1-221ENST00000544983 DCAF1Q9Y4B6 1507 aa23.21■■□□□ 1.31
SNHG1-221ENST00000544983 DCAF8L2P0C7V8 631 aa23.18■■□□□ 1.3
SNHG1-221ENST00000544983 RB1CC1Q8TDY2 1594 aa23.15■■□□□ 1.3
SNHG1-221ENST00000544983 DNAJC5BQ9UF47 199 aa22.69■■□□□ 1.22
SNHG1-221ENST00000544983 UNC13AQ9UPW8 1703 aa22.52■■□□□ 1.2
SNHG1-221ENST00000544983 SCRIBQ14160 1630 aa22.49■■□□□ 1.19
SNHG1-221ENST00000544983 BICRAQ9NZM4 1560 aa22.37■■□□□ 1.17
SNHG1-221ENST00000544983 SHROOM4Q9ULL8 1493 aa22.33■■□□□ 1.16
SNHG1-221ENST00000544983 PABPN1Q86U42 306 aaKnown RBP eCLIP22.32■■□□□ 1.16
SNHG1-221ENST00000544983 EIF4G1Q04637 1599 aaKnown RBP21.78■■□□□ 1.08
SNHG1-221ENST00000544983 BAZ1AQ9NRL2 1556 aaPredicted RBP21.66■■□□□ 1.06
SNHG1-221ENST00000544983 CECR2Q9BXF3 1484 aa21.66■■□□□ 1.06
SNHG1-221ENST00000544983 DNAJC5Q9H3Z4 198 aa21.62■■□□□ 1.05
SNHG1-221ENST00000544983 SMARCA4P51532 1647 aa21.6■■□□□ 1.05
SNHG1-221ENST00000544983 CC2D2AQ9P2K1 1620 aa21.6■■□□□ 1.05
SNHG1-221ENST00000544983 MROH2BQ7Z745 1585 aa21.49■■□□□ 1.03
SNHG1-221ENST00000544983 SMARCA2P51531 1590 aa21.47■■□□□ 1.03
SNHG1-221ENST00000544983 PEG3Q9GZU2 1588 aa21.44■■□□□ 1.02
SNHG1-221ENST00000544983 ATAD2BQ9ULI0 1458 aa21.43■■□□□ 1.02
SNHG1-221ENST00000544983 NCAPD3P42695 1498 aa21.42■■□□□ 1.02
SNHG1-221ENST00000544983 RSF1Q96T23 1441 aaPredicted RBP21.39■■□□□ 1.02
SNHG1-221ENST00000544983 HMGXB3Q12766 1538 aa21.33■■□□□ 1
SNHG1-221ENST00000544983 BAZ1BQ9UIG0 1483 aaKnown RBP21.28■■□□□ 1
SNHG1-221ENST00000544983 WIZO95785 1651 aa21.24■□□□□ 0.99
SNHG1-221ENST00000544983 TOP2AP11388 1531 aaKnown RBP21.11■□□□□ 0.97
SNHG1-221ENST00000544983 SUPT5HO00267 1087 aaKnown RBP21.02■□□□□ 0.96
SNHG1-221ENST00000544983 CCDC88BA6NC98 1476 aa20.84■□□□□ 0.93
SNHG1-221ENST00000544983 CADPSQ9ULU8 1353 aa20.8■□□□□ 0.92
SNHG1-221ENST00000544983 LAMC3Q9Y6N6 1575 aa20.8■□□□□ 0.92
SNHG1-221ENST00000544983 CFTRP13569 1480 aa20.74■□□□□ 0.91
SNHG1-221ENST00000544983 NESP48681 1621 aa20.7■□□□□ 0.9
SNHG1-221ENST00000544983 PDS5BQ9NTI5 1447 aa20.68■□□□□ 0.9
SNHG1-221ENST00000544983 ERCC6Q03468 1493 aa20.59■□□□□ 0.89
SNHG1-221ENST00000544983 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
SNHG1-221ENST00000544983 FANCD2Q9BXW9 1451 aa20.53■□□□□ 0.88
SNHG1-221ENST00000544983 CEP164Q9UPV0 1460 aa20.49■□□□□ 0.87
SNHG1-221ENST00000544983 KIF21AQ7Z4S6 1674 aa20.47■□□□□ 0.87
SNHG1-221ENST00000544983 MRC2Q9UBG0 1479 aa20.4■□□□□ 0.86
SNHG1-221ENST00000544983 THOC2Q8NI27 1593 aaKnown RBP20.35■□□□□ 0.85
SNHG1-221ENST00000544983 ABCC8Q09428 1581 aa20.34■□□□□ 0.85
SNHG1-221ENST00000544983 WDR62O43379 1518 aa20.32■□□□□ 0.84
SNHG1-221ENST00000544983 CUX2O14529 1486 aa20.31■□□□□ 0.84
SNHG1-221ENST00000544983 URB2Q14146 1524 aaKnown RBP20.27■□□□□ 0.84
SNHG1-221ENST00000544983 DNMBPQ6XZF7 1577 aa20.24■□□□□ 0.83
SNHG1-221ENST00000544983 TOPBP1Q92547 1522 aa20.22■□□□□ 0.83
SNHG1-221ENST00000544983 WRNQ14191 1432 aaPredicted RBP eCLIP20.18■□□□□ 0.82
SNHG1-221ENST00000544983 CUX1P39880 1505 aa20.15■□□□□ 0.82
SNHG1-221ENST00000544983 TRIM41Q8WV44 630 aa20.13■□□□□ 0.81
SNHG1-221ENST00000544983 TOP2BQ02880 1626 aa20.09■□□□□ 0.81
SNHG1-221ENST00000544983 BIVM-ERCC5R4GMW8 1640 aa20.08■□□□□ 0.8
SNHG1-221ENST00000544983 POLA1P09884 1462 aaPredicted RBP20.07■□□□□ 0.8
SNHG1-221ENST00000544983 IFT140Q96RY7 1462 aa20.07■□□□□ 0.8
SNHG1-221ENST00000544983 FGD5Q6ZNL6 1462 aa20.05■□□□□ 0.8
SNHG1-221ENST00000544983 SYNJ1O43426 1573 aa20.04■□□□□ 0.8
SNHG1-221ENST00000544983 SOGA1O94964 1423 aa20.02■□□□□ 0.79
SNHG1-221ENST00000544983 TARBP1Q13395 1621 aaKnown RBP19.97■□□□□ 0.79
SNHG1-221ENST00000544983 WDR97A6NE52 1622 aa19.94■□□□□ 0.78
SNHG1-221ENST00000544983 RAD54L2Q9Y4B4 1467 aa19.93■□□□□ 0.78
SNHG1-221ENST00000544983 ABCA10Q8WWZ4 1543 aa19.92■□□□□ 0.78
SNHG1-221ENST00000544983 ZNF608Q9ULD9 1512 aaPredicted RBP19.86■□□□□ 0.77
SNHG1-221ENST00000544983 TDRD9Q8NDG6 1382 aaKnown RBP19.83■□□□□ 0.76
SNHG1-221ENST00000544983 CHIC1Q5VXU3 224 aa19.81■□□□□ 0.76
SNHG1-221ENST00000544983 EIF4G3O43432 1585 aaKnown RBP19.81■□□□□ 0.76
SNHG1-221ENST00000544983 AQRO60306 1485 aaKnown RBP eCLIP19.8■□□□□ 0.767e-14■■■■■ 38.8
SNHG1-221ENST00000544983 GAPVD1Q14C86 1478 aa19.79■□□□□ 0.76
SNHG1-221ENST00000544983 ABCA5Q8WWZ7 1642 aa19.77■□□□□ 0.76
SNHG1-221ENST00000544983 GRIN2BQ13224 1484 aa19.77■□□□□ 0.76
SNHG1-221ENST00000544983 KIF27Q86VH2 1401 aa19.76■□□□□ 0.75
SNHG1-221ENST00000544983 MAGI1Q96QZ7 1491 aaPredicted RBP19.7■□□□□ 0.74
SNHG1-221ENST00000544983 ERICH3Q5RHP9 1530 aa19.7■□□□□ 0.74
SNHG1-221ENST00000544983 PBRM1Q86U86 1689 aa19.67■□□□□ 0.74
SNHG1-221ENST00000544983 SNAPC4Q5SXM2 1469 aa19.64■□□□□ 0.73
SNHG1-221ENST00000544983 EEA1Q15075 1411 aa19.63■□□□□ 0.73
SNHG1-221ENST00000544983 IGF1RP08069 1367 aa19.62■□□□□ 0.73
SNHG1-221ENST00000544983 FHAD1B1AJZ9 1412 aa19.6■□□□□ 0.73
SNHG1-221ENST00000544983 SYNJ2O15056 1496 aa19.6■□□□□ 0.73
SNHG1-221ENST00000544983 CHMP7Q8WUX9 453 aaPredicted RBP19.58■□□□□ 0.72
SNHG1-221ENST00000544983 CUL7Q14999 1698 aa19.56■□□□□ 0.72
SNHG1-221ENST00000544983 ADAMTS12P58397 1594 aa19.55■□□□□ 0.72
SNHG1-221ENST00000544983 OSCARQ8IYS5 282 aa19.54■□□□□ 0.72
SNHG1-221ENST00000544983 RUSC2Q8N2Y8 1516 aa19.54■□□□□ 0.72
SNHG1-221ENST00000544983 FBLN2P98095 1184 aa19.53■□□□□ 0.72
SNHG1-221ENST00000544983 CARMIL1Q5VZK9 1371 aa19.53■□□□□ 0.72
SNHG1-221ENST00000544983 CSRNP3Q8WYN3 585 aa19.5■□□□□ 0.71
SNHG1-221ENST00000544983 GRIN2AQ12879 1464 aa19.49■□□□□ 0.71
SNHG1-221ENST00000544983 CHD1O14646 1710 aa19.49■□□□□ 0.71
SNHG1-221ENST00000544983 RAPGEF2Q9Y4G8 1499 aa19.44■□□□□ 0.7
SNHG1-221ENST00000544983 PRXQ9BXM0 1461 aa19.43■□□□□ 0.7
SNHG1-221ENST00000544983 NUP160Q12769 1436 aa19.41■□□□□ 0.7
SNHG1-221ENST00000544983 FAM9AQ8IZU1 332 aaPredicted RBP19.38■□□□□ 0.69
SNHG1-221ENST00000544983 CEP170Q5SW79 1584 aa19.32■□□□□ 0.68
SNHG1-221ENST00000544983 CLASP1Q7Z460 1538 aa19.32■□□□□ 0.68
SNHG1-221ENST00000544983 KIF21BO75037 1637 aa19.32■□□□□ 0.68
SNHG1-221ENST00000544983 KIAA0586Q9BVV6 1533 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms