RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	AEBP2	Q6ZN18	517 aa	Predicted RBP	22.99	■■□□□ 1.27
SNHG1-222	ENST00000545308	CHIC1	Q5VXU3	224 aa		21.88	■■□□□ 1.09
SNHG1-222	ENST00000545308	SENP3	Q9H4L4	574 aa	Predicted RBP	19.61	■□□□□ 0.73
SNHG1-222	ENST00000545308	PHF23	Q9BUL5	403 aa	Predicted RBP	19.36	■□□□□ 0.69
SNHG1-222	ENST00000545308	FOXD1	Q16676	465 aa		18.27	■□□□□ 0.52
SNHG1-222	ENST00000545308	PLPPR3	Q6T4P5	718 aa		17.5	■□□□□ 0.39
SNHG1-222	ENST00000545308	PPP6R1	Q9UPN7	881 aa		17.11	■□□□□ 0.33
SNHG1-222	ENST00000545308	MSH5	O43196	834 aa		17.09	■□□□□ 0.33
SNHG1-222	ENST00000545308	PIAS4	Q8N2W9	510 aa	Predicted RBP	17.08	■□□□□ 0.32
SNHG1-222	ENST00000545308	ADRA2B	P18089	450 aa		17.06	■□□□□ 0.32
SNHG1-222	ENST00000545308	POTED	Q86YR6	584 aa		16.61	■□□□□ 0.25
SNHG1-222	ENST00000545308	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.65	■□□□□ 0.1
SNHG1-222	ENST00000545308	SCAF1	Q9H7N4	1312 aa	Known RBP	15.62	■□□□□ 0.09
SNHG1-222	ENST00000545308	DMRT2	Q9Y5R5	561 aa		15.56	■□□□□ 0.08
SNHG1-222	ENST00000545308	PPP4R3CP	Q6ZMV5	832 aa		15.34	■□□□□ 0.05
SNHG1-222	ENST00000545308	CNKSR2	Q8WXI2	1034 aa		15.05	■□□□□ -0
SNHG1-222	ENST00000545308	HOXD11	P31277	338 aa	Predicted RBP	15.01	□□□□□ -0.01
SNHG1-222	ENST00000545308	RNF216	Q9NWF9	866 aa	Predicted RBP	14.91	□□□□□ -0.02
SNHG1-222	ENST00000545308	DCAF8L1	A6NGE4	600 aa		14.89	□□□□□ -0.03
SNHG1-222	ENST00000545308	NCBP3	Q53F19	620 aa	Known RBP	14.76	□□□□□ -0.05
SNHG1-222	ENST00000545308	CACNB1	Q02641	598 aa	Predicted RBP	14.63	□□□□□ -0.07
SNHG1-222	ENST00000545308	RNF39	Q9H2S5	420 aa		14.59	□□□□□ -0.07
SNHG1-222	ENST00000545308	NPM3	O75607	178 aa	Known RBP	14.55	□□□□□ -0.08
SNHG1-222	ENST00000545308	DNAJC5B	Q9UF47	199 aa		14.5	□□□□□ -0.09
SNHG1-222	ENST00000545308	C1QBP	Q07021	282 aa	Known RBP	14.38	□□□□□ -0.11
SNHG1-222	ENST00000545308	KCNA4	P22459	653 aa		14.3	□□□□□ -0.12
SNHG1-222	ENST00000545308	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14.28	□□□□□ -0.12
SNHG1-222	ENST00000545308		U3KPZ7	1027 aa	Predicted RBP	13.99	□□□□□ -0.17
SNHG1-222	ENST00000545308	SLC4A2	P04920	1241 aa		13.88	□□□□□ -0.19
SNHG1-222	ENST00000545308	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.78	□□□□□ -0.2
SNHG1-222	ENST00000545308	CAPN15	O75808	1086 aa		13.75	□□□□□ -0.21
SNHG1-222	ENST00000545308	DSG3	P32926	999 aa		13.67	□□□□□ -0.22
SNHG1-222	ENST00000545308	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.62	□□□□□ -0.23
SNHG1-222	ENST00000545308	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.62	□□□□□ -0.23
SNHG1-222	ENST00000545308	APLP2	Q06481	763 aa		13.61	□□□□□ -0.23
SNHG1-222	ENST00000545308	TRH	P20396	242 aa	Predicted RBP	13.53	□□□□□ -0.24
SNHG1-222	ENST00000545308	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.53	□□□□□ -0.24
SNHG1-222	ENST00000545308	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.52	□□□□□ -0.25
SNHG1-222	ENST00000545308	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.5	□□□□□ -0.25
SNHG1-222	ENST00000545308	MYCN	P04198	464 aa	Predicted RBP	13.46	□□□□□ -0.25
SNHG1-222	ENST00000545308	ABCB7	O75027	752 aa		13.42	□□□□□ -0.26
SNHG1-222	ENST00000545308	FOXD4L1	Q9NU39	408 aa		13.33	□□□□□ -0.28
SNHG1-222	ENST00000545308	POLA2	Q14181	598 aa		13.19	□□□□□ -0.3
SNHG1-222	ENST00000545308	ZBTB22	O15209	634 aa		13.14	□□□□□ -0.31
SNHG1-222	ENST00000545308	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.14	□□□□□ -0.31
SNHG1-222	ENST00000545308	RBM42	Q9BTD8	480 aa	Known RBP	13.04	□□□□□ -0.32
SNHG1-222	ENST00000545308	POTEH	Q6S545	545 aa		13.02	□□□□□ -0.33
SNHG1-222	ENST00000545308	ATXN8OS	P0DMR3	200 aa		12.93	□□□□□ -0.34
SNHG1-222	ENST00000545308	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.93	□□□□□ -0.34
SNHG1-222	ENST00000545308	AKT1S1	Q96B36	256 aa		12.76	□□□□□ -0.37
SNHG1-222	ENST00000545308	OSCAR	Q8IYS5	282 aa		12.75	□□□□□ -0.37
SNHG1-222	ENST00000545308	CHRDL2	Q6WN34	429 aa		12.74	□□□□□ -0.37
SNHG1-222	ENST00000545308	FBLN2	P98095	1184 aa		12.63	□□□□□ -0.39
SNHG1-222	ENST00000545308	REM2	Q8IYK8	340 aa	Predicted RBP	12.63	□□□□□ -0.39
SNHG1-222	ENST00000545308	CSRNP3	Q8WYN3	585 aa		12.58	□□□□□ -0.4
SNHG1-222	ENST00000545308	SPDYE2B	A6NHP3	402 aa		12.54	□□□□□ -0.4
SNHG1-222	ENST00000545308	SPDYE6	P0CI01	402 aa		12.54	□□□□□ -0.4
SNHG1-222	ENST00000545308	MKRN4P	Q13434	485 aa	Predicted RBP	12.54	□□□□□ -0.4
SNHG1-222	ENST00000545308	SPDYE2	Q495Y8	402 aa		12.54	□□□□□ -0.4
SNHG1-222	ENST00000545308	PITPNM1	O00562	1244 aa		12.49	□□□□□ -0.41
SNHG1-222	ENST00000545308	PIP4P2	Q8N4L2	257 aa		12.45	□□□□□ -0.42
SNHG1-222	ENST00000545308	EHMT2	Q96KQ7	1210 aa		12.41	□□□□□ -0.42
SNHG1-222	ENST00000545308	FXR2	P51116	673 aa	Known RBP eCLIP	12.38	□□□□□ -0.43
SNHG1-222	ENST00000545308	ZNF692	Q9BU19	519 aa	Predicted RBP	12.38	□□□□□ -0.43
SNHG1-222	ENST00000545308	SSUH2	Q9Y2M2	353 aa		12.37	□□□□□ -0.43
SNHG1-222	ENST00000545308	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.31	□□□□□ -0.44
SNHG1-222	ENST00000545308	CLEC11A	Q9Y240	323 aa		12.27	□□□□□ -0.45
SNHG1-222	ENST00000545308	SP7	Q8TDD2	431 aa	Predicted RBP	12.23	□□□□□ -0.45
SNHG1-222	ENST00000545308	HAX1	O00165	279 aa		12.2	□□□□□ -0.46
SNHG1-222	ENST00000545308	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.2	□□□□□ -0.46
SNHG1-222	ENST00000545308	PRKAR2A	P13861	404 aa	Known RBP	12.17	□□□□□ -0.46
SNHG1-222	ENST00000545308	PRR29	P0C7W0	189 aa		12.08	□□□□□ -0.48
SNHG1-222	ENST00000545308	EVX2	Q03828	476 aa		12.06	□□□□□ -0.48
SNHG1-222	ENST00000545308	CHADL	Q6NUI6	762 aa		12.03	□□□□□ -0.48
SNHG1-222	ENST00000545308	C19orf67	A6NJJ6	358 aa		11.99	□□□□□ -0.49
SNHG1-222	ENST00000545308	SPDYE4	A6NLX3	237 aa		11.96	□□□□□ -0.49
SNHG1-222	ENST00000545308	STAG3	Q9UJ98	1225 aa		11.89	□□□□□ -0.51
SNHG1-222	ENST00000545308	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.87	□□□□□ -0.51
SNHG1-222	ENST00000545308	GABBR2	O75899	941 aa		11.8	□□□□□ -0.52
SNHG1-222	ENST00000545308	CREBZF	Q9NS37	354 aa		11.79	□□□□□ -0.52
SNHG1-222	ENST00000545308	CD44	P16070	742 aa	Known RBP	11.78	□□□□□ -0.52
SNHG1-222	ENST00000545308	PROM2	Q8N271	834 aa		11.69	□□□□□ -0.54
SNHG1-222	ENST00000545308	CLCN6	P51797	869 aa		11.65	□□□□□ -0.54
SNHG1-222	ENST00000545308	ZRANB1	Q9UGI0	708 aa		11.62	□□□□□ -0.55
SNHG1-222	ENST00000545308	MNX1	P50219	401 aa	Predicted RBP	11.61	□□□□□ -0.55
SNHG1-222	ENST00000545308	ZNF579	Q8NAF0	562 aa	Known RBP	11.61	□□□□□ -0.55
SNHG1-222	ENST00000545308	NPM1	P06748	294 aa	Known RBP eCLIP	11.58	□□□□□ -0.56
SNHG1-222	ENST00000545308	POTEI	P0CG38	1075 aa		11.55	□□□□□ -0.56
SNHG1-222	ENST00000545308	PAK3	O75914	559 aa	Predicted RBP	11.54	□□□□□ -0.56
SNHG1-222	ENST00000545308	LHX8	Q68G74	356 aa		11.48	□□□□□ -0.57
SNHG1-222	ENST00000545308	DCBLD2	Q96PD2	775 aa		11.48	□□□□□ -0.57
SNHG1-222	ENST00000545308	GALR2	O43603	387 aa	Predicted RBP	11.46	□□□□□ -0.57
SNHG1-222	ENST00000545308	PHF12	Q96QT6	1004 aa		11.46	□□□□□ -0.57
SNHG1-222	ENST00000545308	MIER1	Q8N108	512 aa		11.41	□□□□□ -0.58
SNHG1-222	ENST00000545308	PLEKHG5	O94827	1062 aa		11.39	□□□□□ -0.59
SNHG1-222	ENST00000545308	FKBP8	Q14318	412 aa		11.39	□□□□□ -0.59
SNHG1-222	ENST00000545308	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.36	□□□□□ -0.59
SNHG1-222	ENST00000545308	CCDC61	Q9Y6R9	512 aa		11.32	□□□□□ -0.6
SNHG1-222	ENST00000545308	PLCD3	Q8N3E9	789 aa		11.31	□□□□□ -0.6
SNHG1-222	ENST00000545308	MS4A3	Q96HJ5	214 aa		11.31	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms