RNA–Protein interactions for RNA: ENST00000542112.5

SNHG1-219, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3 BASIC

Gene SNHG1, Length 780 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-219ENST00000542112 CHIC1Q5VXU3 224 aa13.04□□□□□ -0.32
SNHG1-219ENST00000542112 AEBP2Q6ZN18 517 aaPredicted RBP13□□□□□ -0.33
SNHG1-219ENST00000542112 PHF23Q9BUL5 403 aaPredicted RBP11.46□□□□□ -0.57
SNHG1-219ENST00000542112 SENP3Q9H4L4 574 aaPredicted RBP11.06□□□□□ -0.64
SNHG1-219ENST00000542112 PLPPR3Q6T4P5 718 aa10.75□□□□□ -0.69
SNHG1-219ENST00000542112 FOXD1Q16676 465 aa10.18□□□□□ -0.78
SNHG1-219ENST00000542112 ADRA2BP18089 450 aa10.02□□□□□ -0.81
SNHG1-219ENST00000542112 PPP6R1Q9UPN7 881 aa10□□□□□ -0.81
SNHG1-219ENST00000542112 PIAS4Q8N2W9 510 aaPredicted RBP9.69□□□□□ -0.86
SNHG1-219ENST00000542112 KCNA4P22459 653 aa9.57□□□□□ -0.88
SNHG1-219ENST00000542112 PPP4R3CPQ6ZMV5 832 aa9.49□□□□□ -0.89
SNHG1-219ENST00000542112 NCBP3Q53F19 620 aaKnown RBP9.37□□□□□ -0.91
SNHG1-219ENST00000542112 MSH5O43196 834 aa9.33□□□□□ -0.92
SNHG1-219ENST00000542112 SCAF1Q9H7N4 1312 aaKnown RBP9.27□□□□□ -0.93
SNHG1-219ENST00000542112 EHMT2Q96KQ7 1210 aa9.25□□□□□ -0.93
SNHG1-219ENST00000542112 SLC4A1APQ9BWU0 796 aaKnown RBP9.21□□□□□ -0.94
SNHG1-219ENST00000542112 NPM3O75607 178 aaKnown RBP9.18□□□□□ -0.94
SNHG1-219ENST00000542112 CNKSR2Q8WXI2 1034 aa9.18□□□□□ -0.94
SNHG1-219ENST00000542112 CSRNP3Q8WYN3 585 aa9.01□□□□□ -0.97
SNHG1-219ENST00000542112 MAPK8IP2Q13387 824 aaPredicted RBP8.98□□□□□ -0.97
SNHG1-219ENST00000542112 RNF216Q9NWF9 866 aaPredicted RBP8.93□□□□□ -0.98
SNHG1-219ENST00000542112 DNAJC5BQ9UF47 199 aa8.93□□□□□ -0.98
SNHG1-219ENST00000542112 DMRT2Q9Y5R5 561 aa8.87□□□□□ -0.99
SNHG1-219ENST00000542112 HOXD11P31277 338 aaPredicted RBP8.8□□□□□ -1
SNHG1-219ENST00000542112 ZBTB22O15209 634 aa8.79□□□□□ -1
SNHG1-219ENST00000542112 FOXD4L1Q9NU39 408 aa8.77□□□□□ -1.01
SNHG1-219ENST00000542112 SLC4A2P04920 1241 aa8.58□□□□□ -1.04
SNHG1-219ENST00000542112 MYCNP04198 464 aaPredicted RBP8.51□□□□□ -1.05
SNHG1-219ENST00000542112 ATXN8OSP0DMR3 200 aa8.48□□□□□ -1.05
SNHG1-219ENST00000542112 DCAF8L1A6NGE4 600 aa8.44□□□□□ -1.06
SNHG1-219ENST00000542112 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.39□□□□□ -1.07
SNHG1-219ENST00000542112 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.33□□□□□ -1.08
SNHG1-219ENST00000542112 HNRNPUL2Q1KMD3 747 aaKnown RBP8.33□□□□□ -1.08
SNHG1-219ENST00000542112 SAMD1Q6SPF0 538 aaPredicted RBP8.3□□□□□ -1.08
SNHG1-219ENST00000542112 U3KPZ7 1027 aaPredicted RBP8.26□□□□□ -1.09
SNHG1-219ENST00000542112 APLP2Q06481 763 aa8.2□□□□□ -1.1
SNHG1-219ENST00000542112 ATF5Q9Y2D1 282 aaPredicted RBP8.18□□□□□ -1.1
SNHG1-219ENST00000542112 FKBP8Q14318 412 aa8.14□□□□□ -1.11
SNHG1-219ENST00000542112 ZNF219Q9P2Y4 722 aaPredicted RBP8.08□□□□□ -1.12
SNHG1-219ENST00000542112 AMER1Q5JTC6 1135 aaPredicted RBP8□□□□□ -1.13
SNHG1-219ENST00000542112 RNF39Q9H2S5 420 aa7.99□□□□□ -1.13
SNHG1-219ENST00000542112 MYT1Q01538 1121 aa7.98□□□□□ -1.13
SNHG1-219ENST00000542112 PELP1Q8IZL8 1130 aaKnown RBP7.96□□□□□ -1.14
SNHG1-219ENST00000542112 C1QBPQ07021 282 aaKnown RBP7.94□□□□□ -1.14
SNHG1-219ENST00000542112 TRHP20396 242 aaPredicted RBP7.93□□□□□ -1.14
SNHG1-219ENST00000542112 SPINK5Q9NQ38 1064 aaPredicted RBP7.92□□□□□ -1.14
SNHG1-219ENST00000542112 CAPN15O75808 1086 aa7.91□□□□□ -1.14
SNHG1-219ENST00000542112 FBLN2P98095 1184 aa7.91□□□□□ -1.14
SNHG1-219ENST00000542112 POTEDQ86YR6 584 aa7.91□□□□□ -1.14
SNHG1-219ENST00000542112 RTN4Q9NQC3 1192 aaKnown RBP7.91□□□□□ -1.14
SNHG1-219ENST00000542112 POLA2Q14181 598 aa7.88□□□□□ -1.15
SNHG1-219ENST00000542112 SPDYE4A6NLX3 237 aa7.87□□□□□ -1.15
SNHG1-219ENST00000542112 MKRN4PQ13434 485 aaPredicted RBP7.86□□□□□ -1.15
SNHG1-219ENST00000542112 ZBTB12Q9Y330 459 aaPredicted RBP7.84□□□□□ -1.15
SNHG1-219ENST00000542112 FBXO3Q9UK99 471 aa7.83□□□□□ -1.16
SNHG1-219ENST00000542112 PROM2Q8N271 834 aa7.79□□□□□ -1.16
SNHG1-219ENST00000542112 ABCB7O75027 752 aa7.75□□□□□ -1.17
SNHG1-219ENST00000542112 TTBK1Q5TCY1 1321 aaPredicted RBP7.75□□□□□ -1.17
SNHG1-219ENST00000542112 DSG3P32926 999 aa7.7□□□□□ -1.18
SNHG1-219ENST00000542112 VASPP50552 380 aaPredicted RBP7.68□□□□□ -1.18
SNHG1-219ENST00000542112 SLC24A1O60721 1099 aa7.67□□□□□ -1.18
SNHG1-219ENST00000542112 SPDYE2BA6NHP3 402 aa7.62□□□□□ -1.19
SNHG1-219ENST00000542112 SPDYE6P0CI01 402 aa7.62□□□□□ -1.19
SNHG1-219ENST00000542112 SPDYE2Q495Y8 402 aa7.62□□□□□ -1.19
SNHG1-219ENST00000542112 ZNF692Q9BU19 519 aaPredicted RBP7.61□□□□□ -1.19
SNHG1-219ENST00000542112 NISCHQ9Y2I1 1504 aa7.59□□□□□ -1.19
SNHG1-219ENST00000542112 OSCARQ8IYS5 282 aa7.58□□□□□ -1.2
SNHG1-219ENST00000542112 IFNLR1Q8IU57 520 aaPredicted RBP7.57□□□□□ -1.2
SNHG1-219ENST00000542112 SSUH2Q9Y2M2 353 aa7.57□□□□□ -1.2
SNHG1-219ENST00000542112 CACNB1Q02641 598 aaPredicted RBP7.56□□□□□ -1.2
SNHG1-219ENST00000542112 STAG3Q9UJ98 1225 aa7.56□□□□□ -1.2
SNHG1-219ENST00000542112 PABPN1Q86U42 306 aaKnown RBP eCLIP7.51□□□□□ -1.21
SNHG1-219ENST00000542112 KLHL34Q8N239 644 aa7.48□□□□□ -1.21
SNHG1-219ENST00000542112 SPOCK2Q92563 424 aa7.47□□□□□ -1.21
SNHG1-219ENST00000542112 PLCD3Q8N3E9 789 aa7.46□□□□□ -1.22
SNHG1-219ENST00000542112 PKD2Q13563 968 aa7.43□□□□□ -1.22
SNHG1-219ENST00000542112 MIER1Q8N108 512 aa7.43□□□□□ -1.22
SNHG1-219ENST00000542112 PLEKHG5O94827 1062 aa7.42□□□□□ -1.22
SNHG1-219ENST00000542112 ZBTB47Q9UFB7 747 aaPredicted RBP7.41□□□□□ -1.22
SNHG1-219ENST00000542112 DCAF8L2P0C7V8 631 aa7.38□□□□□ -1.23
SNHG1-219ENST00000542112 RBM42Q9BTD8 480 aaKnown RBP7.38□□□□□ -1.23
SNHG1-219ENST00000542112 ECM2O94769 699 aaPredicted RBP7.36□□□□□ -1.23
SNHG1-219ENST00000542112 PLCB2Q00722 1185 aa7.36□□□□□ -1.23
SNHG1-219ENST00000542112 AKT1S1Q96B36 256 aa7.34□□□□□ -1.23
SNHG1-219ENST00000542112 SPDYE1Q8NFV5 336 aaPredicted RBP7.33□□□□□ -1.24
SNHG1-219ENST00000542112 TRIM41Q8WV44 630 aa7.29□□□□□ -1.24
SNHG1-219ENST00000542112 CIZ1Q9ULV3 898 aaPredicted RBP7.28□□□□□ -1.24
SNHG1-219ENST00000542112 BBXQ8WY36 941 aaPredicted RBP7.26□□□□□ -1.25
SNHG1-219ENST00000542112 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.26□□□□□ -1.25
SNHG1-219ENST00000542112 GSE1Q14687 1217 aa7.25□□□□□ -1.25
SNHG1-219ENST00000542112 RGL2O15211 777 aa7.24□□□□□ -1.25
SNHG1-219ENST00000542112 PRR29P0C7W0 189 aa7.24□□□□□ -1.25
SNHG1-219ENST00000542112 HAP1P54257 671 aaPredicted RBP7.24□□□□□ -1.25
SNHG1-219ENST00000542112 ERICH6Q7L0X2 663 aa7.24□□□□□ -1.25
SNHG1-219ENST00000542112 REM2Q8IYK8 340 aaPredicted RBP7.24□□□□□ -1.25
SNHG1-219ENST00000542112 CLEC11AQ9Y240 323 aa7.24□□□□□ -1.25
SNHG1-219ENST00000542112 NUBP1P53384 320 aa7.2□□□□□ -1.26
SNHG1-219ENST00000542112 NPM1P06748 294 aaKnown RBP eCLIP7.19□□□□□ -1.26
SNHG1-219ENST00000542112 CREBZFQ9NS37 354 aa7.19□□□□□ -1.26
SNHG1-219ENST00000542112 VSIG10Q8N0Z9 540 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms