Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CDH4P55283 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CDH4P55283 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
CDH4P55283 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CDH4P55283 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CDH4P55283 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CDH4P55283 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.69■■□□□ 1.86
CDH4P55283 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
CDH4P55283 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.68■■□□□ 1.86
CDH4P55283 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CDH4P55283 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.68■■□□□ 1.86
CDH4P55283 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.68■■□□□ 1.86
CDH4P55283 MIR7108-201ENST00000614319 87 ntBASIC26.68■■□□□ 1.86
CDH4P55283 LINC00273-201ENST00000539813 1452 ntBASIC26.68■■□□□ 1.86
CDH4P55283 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CDH4P55283 ABCB10P1-201ENST00000614297 2181 ntBASIC26.66■■□□□ 1.86
CDH4P55283 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CDH4P55283 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.66■■□□□ 1.86
CDH4P55283 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.66■■□□□ 1.86
CDH4P55283 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CDH4P55283 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.65■■□□□ 1.86
CDH4P55283 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CDH4P55283 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.86
CDH4P55283 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
CDH4P55283 LINC01971-201ENST00000617888 1048 ntBASIC26.63■■□□□ 1.85
CDH4P55283 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.62■■□□□ 1.85
CDH4P55283 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CDH4P55283 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.61■■□□□ 1.85
CDH4P55283 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.61■■□□□ 1.85
CDH4P55283 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
CDH4P55283 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CDH4P55283 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CDH4P55283 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
CDH4P55283 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.6■■□□□ 1.85
CDH4P55283 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.6■■□□□ 1.85
CDH4P55283 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
CDH4P55283 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.6■■□□□ 1.85
CDH4P55283 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
CDH4P55283 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.58■■□□□ 1.85
CDH4P55283 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.58■■□□□ 1.85
CDH4P55283 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
CDH4P55283 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CDH4P55283 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CDH4P55283 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
CDH4P55283 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.56■■□□□ 1.84
CDH4P55283 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
CDH4P55283 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
CDH4P55283 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDH4P55283 AC135983.2-203ENST00000454486 1613 ntBASIC26.54■■□□□ 1.84
CDH4P55283 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
CDH4P55283 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
CDH4P55283 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.54■■□□□ 1.84
CDH4P55283 DUX4L11-201ENST00000611504 1267 ntBASIC26.54■■□□□ 1.84
CDH4P55283 DUX4L12-201ENST00000614593 1267 ntBASIC26.54■■□□□ 1.84
CDH4P55283 DUX4L14-201ENST00000621227 1267 ntBASIC26.54■■□□□ 1.84
CDH4P55283 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CDH4P55283 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDH4P55283 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDH4P55283 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CDH4P55283 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.53■■□□□ 1.84
CDH4P55283 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDH4P55283 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDH4P55283 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.51■■□□□ 1.84
CDH4P55283 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
CDH4P55283 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.51■■□□□ 1.83
CDH4P55283 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CDH4P55283 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.5■■□□□ 1.83
CDH4P55283 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
CDH4P55283 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
CDH4P55283 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
CDH4P55283 WHAMMP2-203ENST00000563942 1603 ntBASIC26.5■■□□□ 1.83
CDH4P55283 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CDH4P55283 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
CDH4P55283 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.49■■□□□ 1.83
CDH4P55283 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CDH4P55283 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CDH4P55283 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.48■■□□□ 1.83
CDH4P55283 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.48■■□□□ 1.83
CDH4P55283 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CDH4P55283 AP004833.2-201ENST00000532228 1454 ntBASIC26.48■■□□□ 1.83
CDH4P55283 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CDH4P55283 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
CDH4P55283 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.46■■□□□ 1.83
CDH4P55283 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.45■■□□□ 1.82
CDH4P55283 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.45■■□□□ 1.82
CDH4P55283 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.45■■□□□ 1.82
CDH4P55283 DUX4L13-201ENST00000554103 1267 ntBASIC26.45■■□□□ 1.82
CDH4P55283 DUX4L15-201ENST00000611059 1267 ntBASIC26.45■■□□□ 1.82
CDH4P55283 DUX4L23-201ENST00000615195 1269 ntBASIC26.45■■□□□ 1.82
CDH4P55283 DUX4L24-201ENST00000617576 1269 ntBASIC26.45■■□□□ 1.82
CDH4P55283 DUX4L22-201ENST00000618238 1269 ntBASIC26.45■■□□□ 1.82
CDH4P55283 DUX4L20-201ENST00000619712 1269 ntBASIC26.45■■□□□ 1.82
CDH4P55283 DUX4L21-201ENST00000622058 1269 ntBASIC26.45■■□□□ 1.82
CDH4P55283 DUX4L10-201ENST00000622460 1267 ntBASIC26.45■■□□□ 1.82
CDH4P55283 DUX4L25-201ENST00000624915 1269 ntBASIC26.45■■□□□ 1.82
CDH4P55283 AL139393.2-201ENST00000608721 2025 ntBASIC26.44■■□□□ 1.82
CDH4P55283 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CDH4P55283 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.44■■□□□ 1.82
CDH4P55283 CHML-204ENST00000638121 920 ntTSL 2 BASIC26.44■■□□□ 1.82
CDH4P55283 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms