Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
COL6A5A8TX70 AC131212.1-201ENST00000613771 668 ntBASIC20.96■□□□□ 0.95
COL6A5A8TX70 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL6A5A8TX70 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
COL6A5A8TX70 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC20.95■□□□□ 0.94
COL6A5A8TX70 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.95■□□□□ 0.94
COL6A5A8TX70 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.95■□□□□ 0.94
COL6A5A8TX70 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A5A8TX70 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COL6A5A8TX70 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A5A8TX70 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A5A8TX70 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.93■□□□□ 0.94
COL6A5A8TX70 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A5A8TX70 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.93■□□□□ 0.94
COL6A5A8TX70 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.92■□□□□ 0.94
COL6A5A8TX70 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A5A8TX70 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A5A8TX70 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.9■□□□□ 0.94
COL6A5A8TX70 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A5A8TX70 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A5A8TX70 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A5A8TX70 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.9■□□□□ 0.94
COL6A5A8TX70 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A5A8TX70 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
COL6A5A8TX70 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A5A8TX70 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.89■□□□□ 0.93
COL6A5A8TX70 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A5A8TX70 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
COL6A5A8TX70 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.88■□□□□ 0.93
COL6A5A8TX70 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A5A8TX70 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A5A8TX70 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.87■□□□□ 0.93
COL6A5A8TX70 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.87■□□□□ 0.93
COL6A5A8TX70 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A5A8TX70 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.86■□□□□ 0.93
COL6A5A8TX70 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A5A8TX70 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A5A8TX70 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
COL6A5A8TX70 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
COL6A5A8TX70 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC20.84■□□□□ 0.93
COL6A5A8TX70 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
COL6A5A8TX70 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL6A5A8TX70 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A5A8TX70 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A5A8TX70 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A5A8TX70 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A5A8TX70 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A5A8TX70 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.8■□□□□ 0.92
COL6A5A8TX70 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.8■□□□□ 0.92
COL6A5A8TX70 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
COL6A5A8TX70 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A5A8TX70 AC060814.1-201ENST00000554326 538 ntBASIC20.79■□□□□ 0.92
COL6A5A8TX70 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.78■□□□□ 0.92
COL6A5A8TX70 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A5A8TX70 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL6A5A8TX70 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.78■□□□□ 0.92
COL6A5A8TX70 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.77■□□□□ 0.92
COL6A5A8TX70 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL6A5A8TX70 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.76■□□□□ 0.91
COL6A5A8TX70 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL6A5A8TX70 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC20.75■□□□□ 0.91
COL6A5A8TX70 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.75■□□□□ 0.91
COL6A5A8TX70 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A5A8TX70 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL6A5A8TX70 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.74■□□□□ 0.91
COL6A5A8TX70 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A5A8TX70 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A5A8TX70 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A5A8TX70 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL6A5A8TX70 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A5A8TX70 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.72■□□□□ 0.91
COL6A5A8TX70 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A5A8TX70 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
COL6A5A8TX70 AC092296.2-201ENST00000589470 999 ntBASIC20.72■□□□□ 0.91
COL6A5A8TX70 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A5A8TX70 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
COL6A5A8TX70 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A5A8TX70 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
COL6A5A8TX70 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.71■□□□□ 0.91
COL6A5A8TX70 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A5A8TX70 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COL6A5A8TX70 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A5A8TX70 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.7■□□□□ 0.9
COL6A5A8TX70 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A5A8TX70 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A5A8TX70 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.68■□□□□ 0.9
COL6A5A8TX70 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A5A8TX70 AC009299.2-201ENST00000482477 511 ntBASIC20.68■□□□□ 0.9
COL6A5A8TX70 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A5A8TX70 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A5A8TX70 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A5A8TX70 THA1P-201ENST00000590384 1145 ntBASIC20.66■□□□□ 0.9
COL6A5A8TX70 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A5A8TX70 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A5A8TX70 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.66■□□□□ 0.9
COL6A5A8TX70 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.66■□□□□ 0.9
COL6A5A8TX70 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A5A8TX70 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A5A8TX70 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.65■□□□□ 0.9
COL6A5A8TX70 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms