Protein–RNA interactions for Protein: Q8WXH0

SYNE2, Nesprin-2, humanhuman

Known RBP Predictions only

Length 6,885 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2Q8WXH0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
SYNE2Q8WXH0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
SYNE2Q8WXH0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
SYNE2Q8WXH0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
SYNE2Q8WXH0 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
SYNE2Q8WXH0 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC11.34□□□□□ -0.59
SYNE2Q8WXH0 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
SYNE2Q8WXH0 LSM7-203ENST00000585409 512 ntTSL 2 BASIC11.34□□□□□ -0.59
SYNE2Q8WXH0 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC11.33□□□□□ -0.6
SYNE2Q8WXH0 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC11.33□□□□□ -0.6
SYNE2Q8WXH0 TPT1-202ENST00000379055 948 ntTSL 2 BASIC11.33□□□□□ -0.6
SYNE2Q8WXH0 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SYNE2Q8WXH0 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SYNE2Q8WXH0 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
SYNE2Q8WXH0 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SYNE2Q8WXH0 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC11.31□□□□□ -0.6
SYNE2Q8WXH0 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SYNE2Q8WXH0 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC11.3□□□□□ -0.6
SYNE2Q8WXH0 ATP5G2P3-201ENST00000429083 425 ntBASIC11.3□□□□□ -0.6
SYNE2Q8WXH0 AC108673.1-201ENST00000510422 1159 ntBASIC11.3□□□□□ -0.6
SYNE2Q8WXH0 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC11.29□□□□□ -0.6
SYNE2Q8WXH0 KRT18P60-201ENST00000312876 1297 ntBASIC11.29□□□□□ -0.6
SYNE2Q8WXH0 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC11.29□□□□□ -0.6
SYNE2Q8WXH0 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC11.29□□□□□ -0.6
SYNE2Q8WXH0 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
SYNE2Q8WXH0 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC11.28□□□□□ -0.6
SYNE2Q8WXH0 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SYNE2Q8WXH0 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC11.28□□□□□ -0.6
SYNE2Q8WXH0 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
SYNE2Q8WXH0 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
SYNE2Q8WXH0 U85056.1-201ENST00000616429 682 ntBASIC11.27□□□□□ -0.6
SYNE2Q8WXH0 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
SYNE2Q8WXH0 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
SYNE2Q8WXH0 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC11.27□□□□□ -0.61
SYNE2Q8WXH0 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
SYNE2Q8WXH0 MIR638-201ENST00000385237 100 ntBASIC11.26□□□□□ -0.61
SYNE2Q8WXH0 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
SYNE2Q8WXH0 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC11.26□□□□□ -0.61
SYNE2Q8WXH0 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC11.26□□□□□ -0.61
SYNE2Q8WXH0 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
SYNE2Q8WXH0 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
SYNE2Q8WXH0 MIR6090-201ENST00000622481 60 ntBASIC11.26□□□□□ -0.61
SYNE2Q8WXH0 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
SYNE2Q8WXH0 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
SYNE2Q8WXH0 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC11.24□□□□□ -0.61
SYNE2Q8WXH0 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
SYNE2Q8WXH0 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC11.23□□□□□ -0.61
SYNE2Q8WXH0 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SYNE2Q8WXH0 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
SYNE2Q8WXH0 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 AL356441.2-201ENST00000443009 864 ntBASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 AC022413.1-201ENST00000624602 984 ntBASIC11.22□□□□□ -0.61
SYNE2Q8WXH0 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SYNE2Q8WXH0 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC11.21□□□□□ -0.61
SYNE2Q8WXH0 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SYNE2Q8WXH0 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SYNE2Q8WXH0 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC11.21□□□□□ -0.62
SYNE2Q8WXH0 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
SYNE2Q8WXH0 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
SYNE2Q8WXH0 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC11.2□□□□□ -0.62
SYNE2Q8WXH0 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
SYNE2Q8WXH0 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC11.2□□□□□ -0.62
SYNE2Q8WXH0 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SYNE2Q8WXH0 AC008406.3-201ENST00000620001 1374 ntBASIC11.19□□□□□ -0.62
SYNE2Q8WXH0 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SYNE2Q8WXH0 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
SYNE2Q8WXH0 HYI-213ENST00000583037 1322 ntTSL 5 BASIC11.19□□□□□ -0.62
SYNE2Q8WXH0 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
SYNE2Q8WXH0 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC11.18□□□□□ -0.62
SYNE2Q8WXH0 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SYNE2Q8WXH0 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SYNE2Q8WXH0 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SYNE2Q8WXH0 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
SYNE2Q8WXH0 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
SYNE2Q8WXH0 AC009299.2-201ENST00000482477 511 ntBASIC11.17□□□□□ -0.62
SYNE2Q8WXH0 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
SYNE2Q8WXH0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
SYNE2Q8WXH0 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SYNE2Q8WXH0 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC11.16□□□□□ -0.62
SYNE2Q8WXH0 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC11.16□□□□□ -0.62
SYNE2Q8WXH0 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 HES6-204ENST00000409182 863 ntTSL 2 BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC11.15□□□□□ -0.62
SYNE2Q8WXH0 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC11.15□□□□□ -0.63
SYNE2Q8WXH0 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 180.3 ms