Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 AC108673.1-201ENST00000510422 1159 ntBASIC27.62■■■□□ 2.01
RNF139Q8WU17 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
RNF139Q8WU17 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
RNF139Q8WU17 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
RNF139Q8WU17 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC27.6■■■□□ 2.01
RNF139Q8WU17 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
RNF139Q8WU17 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
RNF139Q8WU17 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC27.59■■■□□ 2.01
RNF139Q8WU17 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
RNF139Q8WU17 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC27.59■■■□□ 2.01
RNF139Q8WU17 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
RNF139Q8WU17 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
RNF139Q8WU17 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC27.57■■■□□ 2
RNF139Q8WU17 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.56■■■□□ 2
RNF139Q8WU17 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC27.55■■■□□ 2
RNF139Q8WU17 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC27.55■■■□□ 2
RNF139Q8WU17 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
RNF139Q8WU17 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
RNF139Q8WU17 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
RNF139Q8WU17 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
RNF139Q8WU17 MIR6090-201ENST00000622481 60 ntBASIC27.53■■■□□ 2
RNF139Q8WU17 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC27.53■■■□□ 2
RNF139Q8WU17 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC27.52■■■□□ 2
RNF139Q8WU17 CIB2-204ENST00000557846 934 ntTSL 3 BASIC27.52■■■□□ 2
RNF139Q8WU17 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.52■■■□□ 2
RNF139Q8WU17 ABCB10P1-201ENST00000614297 2181 ntBASIC27.52■■■□□ 2
RNF139Q8WU17 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC27.51■■□□□ 1.99
RNF139Q8WU17 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC27.51■■□□□ 1.99
RNF139Q8WU17 AC010864.1-201ENST00000609407 1511 ntBASIC27.51■■□□□ 1.99
RNF139Q8WU17 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC27.5■■□□□ 1.99
RNF139Q8WU17 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
RNF139Q8WU17 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC27.49■■□□□ 1.99
RNF139Q8WU17 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC27.49■■□□□ 1.99
RNF139Q8WU17 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC27.49■■□□□ 1.99
RNF139Q8WU17 AL135925.1-201ENST00000605920 1701 ntBASIC27.49■■□□□ 1.99
RNF139Q8WU17 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
RNF139Q8WU17 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.47■■□□□ 1.99
RNF139Q8WU17 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC27.47■■□□□ 1.99
RNF139Q8WU17 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
RNF139Q8WU17 MLEC-202ENST00000412616 841 ntTSL 3 BASIC27.46■■□□□ 1.99
RNF139Q8WU17 ST7-AS1-201ENST00000456775 1889 ntBASIC27.44■■□□□ 1.98
RNF139Q8WU17 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC27.44■■□□□ 1.98
RNF139Q8WU17 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RNF139Q8WU17 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RNF139Q8WU17 DUX4L29-201ENST00000425409 679 ntBASIC27.43■■□□□ 1.98
RNF139Q8WU17 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
RNF139Q8WU17 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RNF139Q8WU17 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RNF139Q8WU17 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC27.42■■□□□ 1.98
RNF139Q8WU17 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC27.42■■□□□ 1.98
RNF139Q8WU17 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC27.42■■□□□ 1.98
RNF139Q8WU17 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RNF139Q8WU17 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC27.41■■□□□ 1.98
RNF139Q8WU17 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC27.41■■□□□ 1.98
RNF139Q8WU17 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
RNF139Q8WU17 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
RNF139Q8WU17 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RNF139Q8WU17 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC27.4■■□□□ 1.98
RNF139Q8WU17 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RNF139Q8WU17 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
RNF139Q8WU17 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
RNF139Q8WU17 ABHD17AP4-201ENST00000411545 909 ntBASIC27.37■■□□□ 1.97
RNF139Q8WU17 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC27.37■■□□□ 1.97
RNF139Q8WU17 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RNF139Q8WU17 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
RNF139Q8WU17 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC27.36■■□□□ 1.97
RNF139Q8WU17 AC021231.2-201ENST00000594613 730 ntBASIC27.36■■□□□ 1.97
RNF139Q8WU17 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
RNF139Q8WU17 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC27.35■■□□□ 1.97
RNF139Q8WU17 HGH1-207ENST00000628266 258 ntTSL 5 BASIC27.35■■□□□ 1.97
RNF139Q8WU17 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
RNF139Q8WU17 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
RNF139Q8WU17 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
RNF139Q8WU17 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC27.33■■□□□ 1.97
RNF139Q8WU17 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
RNF139Q8WU17 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
RNF139Q8WU17 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
RNF139Q8WU17 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF139Q8WU17 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RNF139Q8WU17 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF139Q8WU17 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF139Q8WU17 EI24-212ENST00000615917 1407 ntTSL 2 BASIC27.31■■□□□ 1.96
RNF139Q8WU17 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.3■■□□□ 1.96
RNF139Q8WU17 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
RNF139Q8WU17 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RNF139Q8WU17 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
RNF139Q8WU17 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
RNF139Q8WU17 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
RNF139Q8WU17 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC27.28■■□□□ 1.96
RNF139Q8WU17 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
RNF139Q8WU17 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RNF139Q8WU17 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RNF139Q8WU17 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
RNF139Q8WU17 ZNRF2P2-203ENST00000454624 420 ntBASIC27.26■■□□□ 1.95
RNF139Q8WU17 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC27.26■■□□□ 1.95
RNF139Q8WU17 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RNF139Q8WU17 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
RNF139Q8WU17 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RNF139Q8WU17 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RNF139Q8WU17 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms