Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC27■■□□□ 1.91
SHROOM3Q8TF72 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM3Q8TF72 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM3Q8TF72 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC27■■□□□ 1.91
SHROOM3Q8TF72 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM3Q8TF72 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.99■■□□□ 1.91
SHROOM3Q8TF72 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM3Q8TF72 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.98■■□□□ 1.91
SHROOM3Q8TF72 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM3Q8TF72 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM3Q8TF72 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM3Q8TF72 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM3Q8TF72 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM3Q8TF72 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM3Q8TF72 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM3Q8TF72 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM3Q8TF72 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM3Q8TF72 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.97■■□□□ 1.91
SHROOM3Q8TF72 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
SHROOM3Q8TF72 MIR7108-201ENST00000614319 87 ntBASIC26.95■■□□□ 1.9
SHROOM3Q8TF72 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM3Q8TF72 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
SHROOM3Q8TF72 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.94■■□□□ 1.9
SHROOM3Q8TF72 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.93■■□□□ 1.9
SHROOM3Q8TF72 ABCB10P3-201ENST00000561950 2166 ntBASIC26.93■■□□□ 1.9
SHROOM3Q8TF72 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM3Q8TF72 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM3Q8TF72 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
SHROOM3Q8TF72 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SHROOM3Q8TF72 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
SHROOM3Q8TF72 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SHROOM3Q8TF72 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
SHROOM3Q8TF72 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
SHROOM3Q8TF72 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.89■■□□□ 1.89
SHROOM3Q8TF72 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.89■■□□□ 1.89
SHROOM3Q8TF72 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.88■■□□□ 1.89
SHROOM3Q8TF72 MIR3665-201ENST00000578708 105 ntBASIC26.88■■□□□ 1.89
SHROOM3Q8TF72 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SHROOM3Q8TF72 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SHROOM3Q8TF72 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
SHROOM3Q8TF72 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.87■■□□□ 1.89
SHROOM3Q8TF72 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
SHROOM3Q8TF72 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SHROOM3Q8TF72 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SHROOM3Q8TF72 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SHROOM3Q8TF72 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.86■■□□□ 1.89
SHROOM3Q8TF72 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM3Q8TF72 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM3Q8TF72 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM3Q8TF72 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM3Q8TF72 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SHROOM3Q8TF72 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.84■■□□□ 1.89
SHROOM3Q8TF72 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.89
SHROOM3Q8TF72 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SHROOM3Q8TF72 AC139426.1-201ENST00000568218 2529 ntBASIC26.83■■□□□ 1.89
SHROOM3Q8TF72 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
SHROOM3Q8TF72 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.82■■□□□ 1.88
SHROOM3Q8TF72 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SHROOM3Q8TF72 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SHROOM3Q8TF72 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.81■■□□□ 1.88
SHROOM3Q8TF72 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHROOM3Q8TF72 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.8■■□□□ 1.88
SHROOM3Q8TF72 ABHD17AP4-201ENST00000411545 909 ntBASIC26.8■■□□□ 1.88
SHROOM3Q8TF72 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.8■■□□□ 1.88
SHROOM3Q8TF72 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC26.8■■□□□ 1.88
SHROOM3Q8TF72 AC044849.2-201ENST00000606596 710 ntBASIC26.8■■□□□ 1.88
SHROOM3Q8TF72 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SHROOM3Q8TF72 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
SHROOM3Q8TF72 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
SHROOM3Q8TF72 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.79■■□□□ 1.88
SHROOM3Q8TF72 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.79■■□□□ 1.88
SHROOM3Q8TF72 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.78■■□□□ 1.88
SHROOM3Q8TF72 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.78■■□□□ 1.88
SHROOM3Q8TF72 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.77■■□□□ 1.88
SHROOM3Q8TF72 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SHROOM3Q8TF72 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SHROOM3Q8TF72 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
SHROOM3Q8TF72 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.74■■□□□ 1.87
SHROOM3Q8TF72 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.73■■□□□ 1.87
SHROOM3Q8TF72 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.73■■□□□ 1.87
SHROOM3Q8TF72 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SHROOM3Q8TF72 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SHROOM3Q8TF72 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.73■■□□□ 1.87
SHROOM3Q8TF72 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
SHROOM3Q8TF72 AP006261.1-201ENST00000584783 668 ntBASIC26.73■■□□□ 1.87
SHROOM3Q8TF72 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
SHROOM3Q8TF72 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC26.72■■□□□ 1.87
SHROOM3Q8TF72 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SHROOM3Q8TF72 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
SHROOM3Q8TF72 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SHROOM3Q8TF72 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SHROOM3Q8TF72 AC087741.3-201ENST00000624270 1347 ntBASIC26.71■■□□□ 1.87
SHROOM3Q8TF72 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
SHROOM3Q8TF72 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SHROOM3Q8TF72 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SHROOM3Q8TF72 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SHROOM3Q8TF72 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.69■■□□□ 1.86
SHROOM3Q8TF72 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SHROOM3Q8TF72 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
SHROOM3Q8TF72 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms