Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SCN1AP35498 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SCN1AP35498 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC28.35■■■□□ 2.13
SCN1AP35498 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SCN1AP35498 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
SCN1AP35498 AC010864.1-201ENST00000609407 1511 ntBASIC28.34■■■□□ 2.13
SCN1AP35498 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
SCN1AP35498 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.34■■■□□ 2.13
SCN1AP35498 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.34■■■□□ 2.13
SCN1AP35498 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC28.34■■■□□ 2.13
SCN1AP35498 HGH1-207ENST00000628266 258 ntTSL 5 BASIC28.33■■■□□ 2.13
SCN1AP35498 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
SCN1AP35498 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
SCN1AP35498 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SCN1AP35498 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
SCN1AP35498 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.3■■■□□ 2.12
SCN1AP35498 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
SCN1AP35498 AL135925.1-201ENST00000605920 1701 ntBASIC28.3■■■□□ 2.12
SCN1AP35498 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SCN1AP35498 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
SCN1AP35498 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SCN1AP35498 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SCN1AP35498 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.28■■■□□ 2.12
SCN1AP35498 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SCN1AP35498 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SCN1AP35498 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SCN1AP35498 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
SCN1AP35498 ABHD17AP4-201ENST00000411545 909 ntBASIC28.27■■■□□ 2.12
SCN1AP35498 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC28.26■■■□□ 2.11
SCN1AP35498 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.25■■■□□ 2.11
SCN1AP35498 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
SCN1AP35498 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SCN1AP35498 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC28.25■■■□□ 2.11
SCN1AP35498 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SCN1AP35498 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SCN1AP35498 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC28.23■■■□□ 2.11
SCN1AP35498 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC28.22■■■□□ 2.11
SCN1AP35498 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SCN1AP35498 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SCN1AP35498 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.2■■■□□ 2.11
SCN1AP35498 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SCN1AP35498 CIB2-204ENST00000557846 934 ntTSL 3 BASIC28.19■■■□□ 2.1
SCN1AP35498 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.19■■■□□ 2.1
SCN1AP35498 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SCN1AP35498 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SCN1AP35498 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.18■■■□□ 2.1
SCN1AP35498 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SCN1AP35498 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC28.18■■■□□ 2.1
SCN1AP35498 DUX4L29-201ENST00000425409 679 ntBASIC28.17■■■□□ 2.1
SCN1AP35498 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SCN1AP35498 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.16■■■□□ 2.1
SCN1AP35498 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SCN1AP35498 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SCN1AP35498 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
SCN1AP35498 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.16■■■□□ 2.1
SCN1AP35498 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.16■■■□□ 2.1
SCN1AP35498 AC021231.2-201ENST00000594613 730 ntBASIC28.16■■■□□ 2.1
SCN1AP35498 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
SCN1AP35498 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC28.15■■■□□ 2.1
SCN1AP35498 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC28.14■■■□□ 2.09
SCN1AP35498 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
SCN1AP35498 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
SCN1AP35498 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SCN1AP35498 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
SCN1AP35498 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
SCN1AP35498 MIR7108-201ENST00000614319 87 ntBASIC28.13■■■□□ 2.09
SCN1AP35498 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SCN1AP35498 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SCN1AP35498 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC28.1■■■□□ 2.09
SCN1AP35498 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SCN1AP35498 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC28.1■■■□□ 2.09
SCN1AP35498 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SCN1AP35498 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SCN1AP35498 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
SCN1AP35498 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.08
SCN1AP35498 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SCN1AP35498 ST7-AS1-201ENST00000456775 1889 ntBASIC28.07■■■□□ 2.08
SCN1AP35498 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SCN1AP35498 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SCN1AP35498 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
SCN1AP35498 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC28.05■■■□□ 2.08
SCN1AP35498 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.05■■■□□ 2.08
SCN1AP35498 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC28.04■■■□□ 2.08
SCN1AP35498 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SCN1AP35498 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC28.03■■■□□ 2.08
SCN1AP35498 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SCN1AP35498 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC28.03■■■□□ 2.08
SCN1AP35498 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SCN1AP35498 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
SCN1AP35498 ZNRF2P2-203ENST00000454624 420 ntBASIC28.02■■■□□ 2.08
SCN1AP35498 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SCN1AP35498 LINC00273-201ENST00000539813 1452 ntBASIC28.01■■■□□ 2.07
SCN1AP35498 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
SCN1AP35498 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SCN1AP35498 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
SCN1AP35498 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC28.01■■■□□ 2.07
SCN1AP35498 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SCN1AP35498 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SCN1AP35498 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC27.98■■■□□ 2.07
SCN1AP35498 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 7.7 ms