Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
RB1P06400 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
RB1P06400 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RB1P06400 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.47■■■□□ 2.15
RB1P06400 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC28.47■■■□□ 2.15
RB1P06400 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28.46■■■□□ 2.15
RB1P06400 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.46■■■□□ 2.15
RB1P06400 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC28.46■■■□□ 2.15
RB1P06400 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC28.45■■■□□ 2.15
RB1P06400 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.45■■■□□ 2.15
RB1P06400 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC28.45■■■□□ 2.14
RB1P06400 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
RB1P06400 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.42■■■□□ 2.14
RB1P06400 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.42■■■□□ 2.14
RB1P06400 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
RB1P06400 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RB1P06400 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
RB1P06400 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RB1P06400 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.38■■■□□ 2.13
RB1P06400 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC28.37■■■□□ 2.13
RB1P06400 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
RB1P06400 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RB1P06400 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RB1P06400 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC28.34■■■□□ 2.13
RB1P06400 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RB1P06400 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RB1P06400 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RB1P06400 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RB1P06400 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC28.34■■■□□ 2.13
RB1P06400 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RB1P06400 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RB1P06400 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
RB1P06400 SRP68-213ENST00000629930 165 ntTSL 5 BASIC28.34■■■□□ 2.13
RB1P06400 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
RB1P06400 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
RB1P06400 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
RB1P06400 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC28.32■■■□□ 2.12
RB1P06400 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.31■■■□□ 2.12
RB1P06400 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RB1P06400 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC28.3■■■□□ 2.12
RB1P06400 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
RB1P06400 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RB1P06400 RARRES2P2-201ENST00000394842 485 ntBASIC28.28■■■□□ 2.12
RB1P06400 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RB1P06400 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RB1P06400 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC28.27■■■□□ 2.12
RB1P06400 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RB1P06400 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RB1P06400 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
RB1P06400 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.24■■■□□ 2.11
RB1P06400 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC28.24■■■□□ 2.11
RB1P06400 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
RB1P06400 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RB1P06400 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RB1P06400 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.23■■■□□ 2.11
RB1P06400 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC28.23■■■□□ 2.11
RB1P06400 ABHD17AP5-201ENST00000580133 923 ntBASIC28.22■■■□□ 2.11
RB1P06400 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
RB1P06400 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RB1P06400 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC28.21■■■□□ 2.11
RB1P06400 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
RB1P06400 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.19■■■□□ 2.1
RB1P06400 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC28.19■■■□□ 2.1
RB1P06400 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC28.19■■■□□ 2.1
RB1P06400 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RB1P06400 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC28.18■■■□□ 2.1
RB1P06400 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.18■■■□□ 2.1
RB1P06400 GPX1-201ENST00000419349 1106 ntBASIC28.18■■■□□ 2.1
RB1P06400 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RB1P06400 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
RB1P06400 RNF126P1-201ENST00000567452 1320 ntBASIC28.17■■■□□ 2.1
RB1P06400 TPT1-202ENST00000379055 948 ntTSL 2 BASIC28.16■■■□□ 2.1
RB1P06400 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
RB1P06400 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC28.15■■■□□ 2.1
RB1P06400 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RB1P06400 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RB1P06400 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
RB1P06400 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RB1P06400 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RB1P06400 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC28.14■■■□□ 2.1
RB1P06400 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RB1P06400 AC120057.4-201ENST00000624722 1615 ntBASIC28.14■■■□□ 2.09
RB1P06400 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
RB1P06400 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
RB1P06400 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
RB1P06400 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
RB1P06400 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
RB1P06400 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC28.12■■■□□ 2.09
RB1P06400 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
RB1P06400 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.11■■■□□ 2.09
RB1P06400 LINC00273-201ENST00000539813 1452 ntBASIC28.1■■■□□ 2.09
RB1P06400 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
RB1P06400 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
RB1P06400 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
RB1P06400 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC28.1■■■□□ 2.09
RB1P06400 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
RB1P06400 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
RB1P06400 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC28.09■■■□□ 2.09
RB1P06400 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
RB1P06400 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms