Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
PGK1P00558 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
PGK1P00558 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.84■■■□□ 2.37
PGK1P00558 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC29.83■■■□□ 2.37
PGK1P00558 DUX4L13-201ENST00000554103 1267 ntBASIC29.83■■■□□ 2.37
PGK1P00558 DUX4L15-201ENST00000611059 1267 ntBASIC29.83■■■□□ 2.37
PGK1P00558 DUX4L23-201ENST00000615195 1269 ntBASIC29.83■■■□□ 2.37
PGK1P00558 DUX4L24-201ENST00000617576 1269 ntBASIC29.83■■■□□ 2.37
PGK1P00558 DUX4L22-201ENST00000618238 1269 ntBASIC29.83■■■□□ 2.37
PGK1P00558 DUX4L20-201ENST00000619712 1269 ntBASIC29.83■■■□□ 2.37
PGK1P00558 DUX4L21-201ENST00000622058 1269 ntBASIC29.83■■■□□ 2.37
PGK1P00558 DUX4L10-201ENST00000622460 1267 ntBASIC29.83■■■□□ 2.37
PGK1P00558 DUX4L25-201ENST00000624915 1269 ntBASIC29.83■■■□□ 2.37
PGK1P00558 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
PGK1P00558 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
PGK1P00558 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.8■■■□□ 2.36
PGK1P00558 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.8■■■□□ 2.36
PGK1P00558 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
PGK1P00558 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.79■■■□□ 2.36
PGK1P00558 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
PGK1P00558 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.78■■■□□ 2.36
PGK1P00558 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC29.78■■■□□ 2.36
PGK1P00558 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.77■■■□□ 2.36
PGK1P00558 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
PGK1P00558 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
PGK1P00558 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC29.76■■■□□ 2.35
PGK1P00558 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.35
PGK1P00558 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
PGK1P00558 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
PGK1P00558 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.75■■■□□ 2.35
PGK1P00558 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.74■■■□□ 2.35
PGK1P00558 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC29.74■■■□□ 2.35
PGK1P00558 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.74■■■□□ 2.35
PGK1P00558 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.72■■■□□ 2.35
PGK1P00558 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
PGK1P00558 AC120057.4-201ENST00000624722 1615 ntBASIC29.71■■■□□ 2.35
PGK1P00558 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
PGK1P00558 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
PGK1P00558 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
PGK1P00558 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
PGK1P00558 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
PGK1P00558 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
PGK1P00558 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.68■■■□□ 2.34
PGK1P00558 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.68■■■□□ 2.34
PGK1P00558 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.68■■■□□ 2.34
PGK1P00558 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.68■■■□□ 2.34
PGK1P00558 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
PGK1P00558 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
PGK1P00558 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.66■■■□□ 2.34
PGK1P00558 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
PGK1P00558 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.65■■■□□ 2.34
PGK1P00558 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC29.62■■■□□ 2.33
PGK1P00558 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.62■■■□□ 2.33
PGK1P00558 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC29.61■■■□□ 2.33
PGK1P00558 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.6■■■□□ 2.33
PGK1P00558 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
PGK1P00558 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
PGK1P00558 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.6■■■□□ 2.33
PGK1P00558 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.59■■■□□ 2.33
PGK1P00558 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
PGK1P00558 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
PGK1P00558 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
PGK1P00558 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.58■■■□□ 2.33
PGK1P00558 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
PGK1P00558 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
PGK1P00558 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
PGK1P00558 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
PGK1P00558 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
PGK1P00558 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
PGK1P00558 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
PGK1P00558 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC29.56■■■□□ 2.32
PGK1P00558 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
PGK1P00558 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.55■■■□□ 2.32
PGK1P00558 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
PGK1P00558 CHST11-202ENST00000546689 756 ntTSL 2 BASIC29.54■■■□□ 2.32
PGK1P00558 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
PGK1P00558 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
PGK1P00558 RARRES2P2-201ENST00000394842 485 ntBASIC29.53■■■□□ 2.32
PGK1P00558 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.53■■■□□ 2.32
PGK1P00558 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
PGK1P00558 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.53■■■□□ 2.32
PGK1P00558 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
PGK1P00558 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
PGK1P00558 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC29.52■■■□□ 2.32
PGK1P00558 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC29.52■■■□□ 2.32
PGK1P00558 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
PGK1P00558 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
PGK1P00558 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.5■■■□□ 2.31
PGK1P00558 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.5■■■□□ 2.31
PGK1P00558 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
PGK1P00558 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
PGK1P00558 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC29.49■■■□□ 2.31
PGK1P00558 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC29.48■■■□□ 2.31
PGK1P00558 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
PGK1P00558 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
PGK1P00558 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
PGK1P00558 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
PGK1P00558 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PGK1P00558 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
PGK1P00558 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms