Protein–RNA interactions for Protein: A0PK11

CLRN2, Clarin-2, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN2A0PK11 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.79■■■□□ 2.68
CLRN2A0PK11 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
CLRN2A0PK11 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
CLRN2A0PK11 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
CLRN2A0PK11 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.75■■■□□ 2.67
CLRN2A0PK11 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CLRN2A0PK11 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.74■■■□□ 2.67
CLRN2A0PK11 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
CLRN2A0PK11 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
CLRN2A0PK11 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
CLRN2A0PK11 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.72■■■□□ 2.67
CLRN2A0PK11 METRNL-202ENST00000570778 967 ntTSL 5 BASIC31.72■■■□□ 2.67
CLRN2A0PK11 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
CLRN2A0PK11 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.72■■■□□ 2.67
CLRN2A0PK11 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CLRN2A0PK11 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.71■■■□□ 2.67
CLRN2A0PK11 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CLRN2A0PK11 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.7■■■□□ 2.67
CLRN2A0PK11 DUX4L13-201ENST00000554103 1267 ntBASIC31.7■■■□□ 2.67
CLRN2A0PK11 DUX4L15-201ENST00000611059 1267 ntBASIC31.7■■■□□ 2.67
CLRN2A0PK11 DUX4L23-201ENST00000615195 1269 ntBASIC31.7■■■□□ 2.67
CLRN2A0PK11 DUX4L24-201ENST00000617576 1269 ntBASIC31.7■■■□□ 2.67
CLRN2A0PK11 DUX4L22-201ENST00000618238 1269 ntBASIC31.7■■■□□ 2.67
CLRN2A0PK11 DUX4L20-201ENST00000619712 1269 ntBASIC31.7■■■□□ 2.67
CLRN2A0PK11 DUX4L21-201ENST00000622058 1269 ntBASIC31.7■■■□□ 2.67
CLRN2A0PK11 DUX4L10-201ENST00000622460 1267 ntBASIC31.7■■■□□ 2.67
CLRN2A0PK11 DUX4L25-201ENST00000624915 1269 ntBASIC31.7■■■□□ 2.67
CLRN2A0PK11 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
CLRN2A0PK11 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CLRN2A0PK11 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
CLRN2A0PK11 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CLRN2A0PK11 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.68■■■□□ 2.66
CLRN2A0PK11 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CLRN2A0PK11 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
CLRN2A0PK11 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CLRN2A0PK11 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CLRN2A0PK11 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.67■■■□□ 2.66
CLRN2A0PK11 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.66■■■□□ 2.66
CLRN2A0PK11 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.66■■■□□ 2.66
CLRN2A0PK11 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CLRN2A0PK11 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
CLRN2A0PK11 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.64■■■□□ 2.66
CLRN2A0PK11 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.64■■■□□ 2.66
CLRN2A0PK11 HES6-205ENST00000409356 528 ntTSL 2 BASIC31.63■■■□□ 2.65
CLRN2A0PK11 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.63■■■□□ 2.65
CLRN2A0PK11 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
CLRN2A0PK11 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.62■■■□□ 2.65
CLRN2A0PK11 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.61■■■□□ 2.65
CLRN2A0PK11 CHML-204ENST00000638121 920 ntTSL 2 BASIC31.6■■■□□ 2.65
CLRN2A0PK11 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CLRN2A0PK11 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.59■■■□□ 2.65
CLRN2A0PK11 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.57■■■□□ 2.64
CLRN2A0PK11 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CLRN2A0PK11 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC31.56■■■□□ 2.64
CLRN2A0PK11 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CLRN2A0PK11 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CLRN2A0PK11 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CLRN2A0PK11 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CLRN2A0PK11 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CLRN2A0PK11 AL161658.1-201ENST00000623641 1967 ntBASIC31.54■■■□□ 2.64
CLRN2A0PK11 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.53■■■□□ 2.64
CLRN2A0PK11 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.53■■■□□ 2.64
CLRN2A0PK11 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.52■■■□□ 2.64
CLRN2A0PK11 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.64
CLRN2A0PK11 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CLRN2A0PK11 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
CLRN2A0PK11 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CLRN2A0PK11 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CLRN2A0PK11 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CLRN2A0PK11 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CLRN2A0PK11 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
CLRN2A0PK11 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.48■■■□□ 2.63
CLRN2A0PK11 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
CLRN2A0PK11 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CLRN2A0PK11 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CLRN2A0PK11 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLRN2A0PK11 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLRN2A0PK11 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLRN2A0PK11 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
CLRN2A0PK11 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLRN2A0PK11 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.44■■■□□ 2.62
CLRN2A0PK11 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLRN2A0PK11 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC31.44■■■□□ 2.62
CLRN2A0PK11 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC31.42■■■□□ 2.62
CLRN2A0PK11 CHST11-202ENST00000546689 756 ntTSL 2 BASIC31.42■■■□□ 2.62
CLRN2A0PK11 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.42■■■□□ 2.62
CLRN2A0PK11 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.41■■■□□ 2.62
CLRN2A0PK11 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CLRN2A0PK11 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CLRN2A0PK11 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
CLRN2A0PK11 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.39■■■□□ 2.62
CLRN2A0PK11 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CLRN2A0PK11 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CLRN2A0PK11 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CLRN2A0PK11 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CLRN2A0PK11 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CLRN2A0PK11 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
CLRN2A0PK11 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.39■■■□□ 2.62
CLRN2A0PK11 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
CLRN2A0PK11 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms