Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 NKTR-201ENST00000232978 7343 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.615e-13■□□□□ 8.6
CDC40O60508 NKTR-211ENST00000468735 7964 ntTSL 26.86□□□□□ -1.315e-13■□□□□ 8.6
CDC40O60508 NKTR-202ENST00000429888 7325 ntTSL 53.99□□□□□ -1.775e-13■□□□□ 8.6
CDC40O60508 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.96□□□□□ -1.785e-13■□□□□ 8.6
CDC40O60508 NKTR-209ENST00000465584 3839 ntTSL 22.15□□□□□ -2.075e-13■□□□□ 8.6
CDC40O60508 PKP4-209ENST00000479398 550 ntTSL 519.05■□□□□ 0.645e-9■□□□□ 8.6
CDC40O60508 PKP4-205ENST00000426248 4134 ntTSL 1 (best)14.37□□□□□ -0.115e-9■□□□□ 8.6
CDC40O60508 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.535e-9■□□□□ 8.6
CDC40O60508 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.735e-9■□□□□ 8.6
CDC40O60508 PKP4-201ENST00000389757 5777 ntAPPRIS ALT1 TSL 1 (best) BASIC9.81□□□□□ -0.845e-9■□□□□ 8.6
CDC40O60508 PKP4-206ENST00000452162 2359 ntTSL 1 (best)9.68□□□□□ -0.865e-9■□□□□ 8.6
CDC40O60508 PKP4-203ENST00000411900 552 ntTSL 49.34□□□□□ -0.915e-9■□□□□ 8.6
CDC40O60508 PKP4-207ENST00000457109 520 ntTSL 38.26□□□□□ -1.095e-9■□□□□ 8.6
CDC40O60508 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC8.22□□□□□ -1.095e-9■□□□□ 8.6
CDC40O60508 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC7.04□□□□□ -1.285e-9■□□□□ 8.6
CDC40O60508 IGF2BP3-213ENST00000491719 800 ntTSL 519.1■□□□□ 0.652e-8■□□□□ 8.6
CDC40O60508 IGF2BP3-207ENST00000468263 706 ntTSL 215.81■□□□□ 0.122e-8■□□□□ 8.6
CDC40O60508 IGF2BP3-210ENST00000476938 500 ntTSL 214.75□□□□□ -0.052e-8■□□□□ 8.6
CDC40O60508 IGF2BP3-203ENST00000465058 534 ntTSL 414.61□□□□□ -0.072e-8■□□□□ 8.6
CDC40O60508 IGF2BP3-211ENST00000479504 559 ntTSL 414.61□□□□□ -0.072e-8■□□□□ 8.6
CDC40O60508 IGF2BP3-204ENST00000466809 588 ntTSL 514.21□□□□□ -0.132e-8■□□□□ 8.6
CDC40O60508 IGF2BP3-206ENST00000468005 2948 ntTSL 512.72□□□□□ -0.372e-8■□□□□ 8.6
CDC40O60508 IGF2BP3-202ENST00000421467 2988 ntTSL 58.89□□□□□ -0.992e-8■□□□□ 8.6
CDC40O60508 IGF2BP3-208ENST00000469723 556 ntTSL 57.53□□□□□ -1.22e-8■□□□□ 8.6
CDC40O60508 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.422e-8■□□□□ 8.6
CDC40O60508 OAZ1-208ENST00000592727 726 ntTSL 213.97□□□□□ -0.171e-7■□□□□ 8.5
CDC40O60508 TARDBP-225ENST00000621715 816 ntTSL 315.63■□□□□ 0.095e-11■□□□□ 8.5
CDC40O60508 TARDBP-229ENST00000638264 774 ntTSL 1 (best) BASIC10.62□□□□□ -0.715e-11■□□□□ 8.5
CDC40O60508 RHBDF2-216ENST00000592123 935 ntTSL 520.35■□□□□ 0.856e-7■□□□□ 8.5
CDC40O60508 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.736e-7■□□□□ 8.5
CDC40O60508 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.736e-7■□□□□ 8.5
CDC40O60508 SELENOO-202ENST00000492092 1626 ntTSL 1 (best)18.6■□□□□ 0.576e-7■□□□□ 8.5
CDC40O60508 RHBDF2-218ENST00000593103 562 ntTSL 518.1■□□□□ 0.496e-7■□□□□ 8.5
CDC40O60508 RHBDF2-208ENST00000590288 734 ntTSL 418.09■□□□□ 0.496e-7■□□□□ 8.5
CDC40O60508 RHBDF2-203ENST00000585989 568 ntTSL 418■□□□□ 0.476e-7■□□□□ 8.5
CDC40O60508 RHBDF2-212ENST00000591697 613 ntTSL 417.89■□□□□ 0.456e-7■□□□□ 8.5
CDC40O60508 SEMA4C-205ENST00000474420 2625 ntTSL 217.18■□□□□ 0.342e-11■□□□□ 8.5
CDC40O60508 RHBDF2-217ENST00000592378 533 ntTSL 416.88■□□□□ 0.296e-7■□□□□ 8.5
CDC40O60508 RHBDF2-211ENST00000591255 545 ntTSL 416.17■□□□□ 0.186e-7■□□□□ 8.5
CDC40O60508 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.052e-11■□□□□ 8.5
CDC40O60508 GSE1-214ENST00000574293 777 ntTSL 314.28□□□□□ -0.126e-7■□□□□ 8.5
CDC40O60508 SEMA4C-204ENST00000467747 3371 ntTSL 213.18□□□□□ -0.32e-11■□□□□ 8.5
CDC40O60508 SEMA4C-206ENST00000482925 3776 ntTSL 212.37□□□□□ -0.432e-11■□□□□ 8.5
CDC40O60508 RHBDF2-215ENST00000591885 3599 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.776e-7■□□□□ 8.5
CDC40O60508 RHBDF2-201ENST00000313080 3582 ntTSL 1 (best) BASIC10.23□□□□□ -0.776e-7■□□□□ 8.5
CDC40O60508 DAZAP1-206ENST00000587833 560 ntTSL 59.5□□□□□ -0.897e-8■□□□□ 8.5
CDC40O60508 SCARB1-206ENST00000539320 720 ntTSL 220.58■□□□□ 0.892e-6■□□□□ 8.5
CDC40O60508 SCARB1-210ENST00000545493 581 ntTSL 219.57■□□□□ 0.722e-6■□□□□ 8.5
CDC40O60508 LIME1-204ENST00000476183 809 ntAPPRIS ALT2 TSL 519.49■□□□□ 0.712e-6■□□□□ 8.5
CDC40O60508 LIME1-210ENST00000621325 2410 ntTSL 219.3■□□□□ 0.682e-6■□□□□ 8.5
CDC40O60508 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.13■□□□□ 0.652e-6■□□□□ 8.5
CDC40O60508 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.9■□□□□ 0.622e-6■□□□□ 8.5
CDC40O60508 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.492e-6■□□□□ 8.5
CDC40O60508 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.94■□□□□ 0.462e-6■□□□□ 8.5
CDC40O60508 TNRC18-204ENST00000413081 925 ntTSL 317.65■□□□□ 0.422e-6■□□□□ 8.5
CDC40O60508 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.392e-6■□□□□ 8.5
CDC40O60508 H2AFX-201ENST00000375167 1373 ntTSL 216.49■□□□□ 0.232e-6■□□□□ 8.5
CDC40O60508 AL121845.2-202ENST00000476221 446 ntTSL 516.42■□□□□ 0.222e-6■□□□□ 8.5
CDC40O60508 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.28■□□□□ 0.22e-6■□□□□ 8.5
CDC40O60508 SCARB1-205ENST00000538291 5527 ntTSL 516.12■□□□□ 0.172e-6■□□□□ 8.5
CDC40O60508 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.1■□□□□ 0.172e-6■□□□□ 8.5
CDC40O60508 LIME1-209ENST00000494776 391 ntTSL 514.67□□□□□ -0.062e-6■□□□□ 8.5
CDC40O60508 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.61□□□□□ -0.072e-6■□□□□ 8.5
CDC40O60508 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.122e-6■□□□□ 8.5
CDC40O60508 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.142e-6■□□□□ 8.5
CDC40O60508 KPNB1-205ENST00000577918 859 ntTSL 313.84□□□□□ -0.192e-6■□□□□ 8.5
CDC40O60508 SCARB1-207ENST00000541661 476 ntTSL 512.2□□□□□ -0.462e-6■□□□□ 8.5
CDC40O60508 SPTAN1-226ENST00000631315 581 ntTSL 212.04□□□□□ -0.482e-6■□□□□ 8.5
CDC40O60508 SEC16A-206ENST00000431893 6465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.572e-6■□□□□ 8.5
CDC40O60508 SEC16A-207ENST00000453963 4834 ntAPPRIS ALT2 TSL 1 (best)11.46□□□□□ -0.572e-6■□□□□ 8.5
CDC40O60508 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC11.35□□□□□ -0.592e-6■□□□□ 8.5
CDC40O60508 SCARB1-204ENST00000535005 1845 ntTSL 1 (best)11.1□□□□□ -0.632e-6■□□□□ 8.5
CDC40O60508 SEC16A-205ENST00000371706 8093 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.662e-6■□□□□ 8.5
CDC40O60508 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.782e-6■□□□□ 8.5
CDC40O60508 ATP11A-208ENST00000459908 4516 ntTSL 210.06□□□□□ -0.82e-6■□□□□ 8.5
CDC40O60508 SPTAN1-228ENST00000635853 5870 ntTSL 59.7□□□□□ -0.862e-6■□□□□ 8.5
CDC40O60508 SPTAN1-204ENST00000461855 857 ntTSL 29.27□□□□□ -0.932e-6■□□□□ 8.5
CDC40O60508 SEC16A-204ENST00000313084 3073 ntAPPRIS ALT2 TSL 2 BASIC9.14□□□□□ -0.952e-6■□□□□ 8.5
CDC40O60508 SEC16A-201ENST00000277537 3910 ntAPPRIS ALT2 TSL 1 (best)8.37□□□□□ -1.072e-6■□□□□ 8.5
CDC40O60508 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC7.96□□□□□ -1.142e-6■□□□□ 8.5
CDC40O60508 KPNB1-211ENST00000582097 2347 ntTSL 27.75□□□□□ -1.172e-6■□□□□ 8.5
CDC40O60508 ATP11A-204ENST00000418678 3163 ntAPPRIS ALT2 TSL 1 (best)6.84□□□□□ -1.312e-6■□□□□ 8.5
CDC40O60508 ATP11A-209ENST00000466946 431 ntTSL 56.78□□□□□ -1.322e-6■□□□□ 8.5
CDC40O60508 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC6.56□□□□□ -1.362e-6■□□□□ 8.5
CDC40O60508 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.97□□□□□ -0.017e-7■□□□□ 8.4
CDC40O60508 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.84□□□□□ -0.037e-7■□□□□ 8.4
CDC40O60508 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.077e-7■□□□□ 8.4
CDC40O60508 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.087e-7■□□□□ 8.4
CDC40O60508 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.38□□□□□ -0.117e-7■□□□□ 8.4
CDC40O60508 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.38□□□□□ -0.117e-7■□□□□ 8.4
CDC40O60508 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.247e-7■□□□□ 8.4
CDC40O60508 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.46□□□□□ -0.257e-7■□□□□ 8.4
CDC40O60508 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.18□□□□□ -0.37e-7■□□□□ 8.4
CDC40O60508 GAS5-229ENST00000458220 469 ntTSL 23.29□□□□□ -1.882e-10■□□□□ 8.4
CDC40O60508 LSS-203ENST00000419093 517 ntTSL 38.99□□□□□ -0.975e-13■□□□□ 8.4
CDC40O60508 SRRM2-226ENST00000576415 461 ntTSL 223.67■■□□□ 1.382e-7■□□□□ 8.4
CDC40O60508 SRRM2-223ENST00000575701 860 ntTSL 323.23■■□□□ 1.312e-7■□□□□ 8.4
CDC40O60508 STAU1-208ENST00000437404 1085 ntTSL 1 (best)19.03■□□□□ 0.642e-7■□□□□ 8.4
CDC40O60508 STAU1-203ENST00000360426 3211 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.662e-7■□□□□ 8.4
CDC40O60508 STAU1-205ENST00000371802 3154 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.752e-7■□□□□ 8.4
Retrieved 100 of 5,364 protein–RNA pairs in 126.9 ms