RNA–Protein interactions for RNA: ENST00000535005.5

SCARB1-204, Transcript of scavenger receptor class B member 1, humanhuman

TSL 1 (best)

Gene SCARB1, Length 1,845 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-204ENST00000535005 NISCHQ9Y2I1 1504 aa28.85■■■□□ 2.21
SCARB1-204ENST00000535005 CCDC180Q9P1Z9 1646 aa25.41■■□□□ 1.66
SCARB1-204ENST00000535005 ABCC9O60706 1549 aa24.37■■□□□ 1.49
SCARB1-204ENST00000535005 ZCCHC6Q5VYS8 1495 aaKnown RBP24.13■■□□□ 1.45
SCARB1-204ENST00000535005 DCAF1Q9Y4B6 1507 aa23.94■■□□□ 1.42
SCARB1-204ENST00000535005 MYO15BQ96JP2 1530 aa23.86■■□□□ 1.41
SCARB1-204ENST00000535005 DCAF8L2P0C7V8 631 aa23.85■■□□□ 1.41
SCARB1-204ENST00000535005 NACADO15069 1562 aa23.8■■□□□ 1.4
SCARB1-204ENST00000535005 RB1CC1Q8TDY2 1594 aa23.69■■□□□ 1.38
SCARB1-204ENST00000535005 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
SCARB1-204ENST00000535005 UNC13AQ9UPW8 1703 aa23.1■■□□□ 1.29
SCARB1-204ENST00000535005 SHROOM4Q9ULL8 1493 aa23.02■■□□□ 1.28
SCARB1-204ENST00000535005 BICRAQ9NZM4 1560 aa22.96■■□□□ 1.27
SCARB1-204ENST00000535005 PABPN1Q86U42 306 aaKnown RBP eCLIP22.87■■□□□ 1.25
SCARB1-204ENST00000535005 CECR2Q9BXF3 1484 aa22.41■■□□□ 1.18
SCARB1-204ENST00000535005 BAZ1AQ9NRL2 1556 aaPredicted RBP22.32■■□□□ 1.16
SCARB1-204ENST00000535005 EIF4G1Q04637 1599 aaKnown RBP22.31■■□□□ 1.16
SCARB1-204ENST00000535005 SMARCA4P51532 1647 aa22.26■■□□□ 1.15
SCARB1-204ENST00000535005 MROH2BQ7Z745 1585 aa22.23■■□□□ 1.15
SCARB1-204ENST00000535005 RSF1Q96T23 1441 aaPredicted RBP22.18■■□□□ 1.14
SCARB1-204ENST00000535005 CC2D2AQ9P2K1 1620 aa22.07■■□□□ 1.12
SCARB1-204ENST00000535005 PEG3Q9GZU2 1588 aa22.07■■□□□ 1.12
SCARB1-204ENST00000535005 ATAD2BQ9ULI0 1458 aa22.04■■□□□ 1.12
SCARB1-204ENST00000535005 SMARCA2P51531 1590 aa22.03■■□□□ 1.12
SCARB1-204ENST00000535005 WIZO95785 1651 aa21.98■■□□□ 1.11
SCARB1-204ENST00000535005 NCAPD3P42695 1498 aa21.98■■□□□ 1.11
SCARB1-204ENST00000535005 DNAJC5BQ9UF47 199 aa21.96■■□□□ 1.11
SCARB1-204ENST00000535005 SUPT5HO00267 1087 aaKnown RBP21.93■■□□□ 1.1
SCARB1-204ENST00000535005 HMGXB3Q12766 1538 aa21.89■■□□□ 1.09
SCARB1-204ENST00000535005 BAZ1BQ9UIG0 1483 aaKnown RBP21.86■■□□□ 1.09
SCARB1-204ENST00000535005 TOP2AP11388 1531 aaKnown RBP21.81■■□□□ 1.08
SCARB1-204ENST00000535005 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
SCARB1-204ENST00000535005 CADPSQ9ULU8 1353 aa21.35■■□□□ 1.01
SCARB1-204ENST00000535005 CFTRP13569 1480 aa21.33■■□□□ 1.01
SCARB1-204ENST00000535005 LAMC3Q9Y6N6 1575 aa21.29■■□□□ 1
SCARB1-204ENST00000535005 NESP48681 1621 aa21.24■□□□□ 0.99
SCARB1-204ENST00000535005 PDS5BQ9NTI5 1447 aa21.14■□□□□ 0.97
SCARB1-204ENST00000535005 PRDM2Q13029 1718 aa21.14■□□□□ 0.97
SCARB1-204ENST00000535005 FANCD2Q9BXW9 1451 aa21.08■□□□□ 0.97
SCARB1-204ENST00000535005 CEP164Q9UPV0 1460 aa21■□□□□ 0.95
SCARB1-204ENST00000535005 KIF21AQ7Z4S6 1674 aa20.97■□□□□ 0.95
SCARB1-204ENST00000535005 ERCC6Q03468 1493 aa20.96■□□□□ 0.95
SCARB1-204ENST00000535005 ABCC8Q09428 1581 aa20.88■□□□□ 0.93
SCARB1-204ENST00000535005 WRNQ14191 1432 aaPredicted RBP eCLIP20.88■□□□□ 0.93
SCARB1-204ENST00000535005 MRC2Q9UBG0 1479 aa20.88■□□□□ 0.93
SCARB1-204ENST00000535005 URB2Q14146 1524 aaKnown RBP20.84■□□□□ 0.93
SCARB1-204ENST00000535005 CUX1P39880 1505 aa20.82■□□□□ 0.92
SCARB1-204ENST00000535005 DNMBPQ6XZF7 1577 aa20.82■□□□□ 0.92
SCARB1-204ENST00000535005 THOC2Q8NI27 1593 aaKnown RBP20.81■□□□□ 0.92
SCARB1-204ENST00000535005 CHIC1Q5VXU3 224 aa20.81■□□□□ 0.92
SCARB1-204ENST00000535005 TOPBP1Q92547 1522 aa20.8■□□□□ 0.92
SCARB1-204ENST00000535005 WDR62O43379 1518 aa20.79■□□□□ 0.92
SCARB1-204ENST00000535005 SYNJ1O43426 1573 aa20.78■□□□□ 0.92
SCARB1-204ENST00000535005 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
SCARB1-204ENST00000535005 BIVM-ERCC5R4GMW8 1640 aa20.76■□□□□ 0.91
SCARB1-204ENST00000535005 TRIM41Q8WV44 630 aa20.72■□□□□ 0.91
SCARB1-204ENST00000535005 FGD5Q6ZNL6 1462 aa20.67■□□□□ 0.9
SCARB1-204ENST00000535005 POLA1P09884 1462 aaPredicted RBP20.66■□□□□ 0.9
SCARB1-204ENST00000535005 CUX2O14529 1486 aa20.61■□□□□ 0.89
SCARB1-204ENST00000535005 SOGA1O94964 1423 aa20.6■□□□□ 0.89
SCARB1-204ENST00000535005 IFT140Q96RY7 1462 aa20.56■□□□□ 0.88
SCARB1-204ENST00000535005 RAD54L2Q9Y4B4 1467 aa20.55■□□□□ 0.88
SCARB1-204ENST00000535005 TARBP1Q13395 1621 aaKnown RBP20.54■□□□□ 0.88
SCARB1-204ENST00000535005 ABCA10Q8WWZ4 1543 aa20.52■□□□□ 0.88
SCARB1-204ENST00000535005 WDR97A6NE52 1622 aa20.46■□□□□ 0.87
SCARB1-204ENST00000535005 KIF27Q86VH2 1401 aa20.42■□□□□ 0.86
SCARB1-204ENST00000535005 ZNF608Q9ULD9 1512 aaPredicted RBP20.4■□□□□ 0.86
SCARB1-204ENST00000535005 TDRD9Q8NDG6 1382 aaKnown RBP20.4■□□□□ 0.86
SCARB1-204ENST00000535005 EEA1Q15075 1411 aa20.37■□□□□ 0.85
SCARB1-204ENST00000535005 ABCA5Q8WWZ7 1642 aa20.37■□□□□ 0.85
SCARB1-204ENST00000535005 RUSC2Q8N2Y8 1516 aa20.36■□□□□ 0.85
SCARB1-204ENST00000535005 AQRO60306 1485 aaKnown RBP eCLIP20.36■□□□□ 0.857e-7■■■■■ 33.9
SCARB1-204ENST00000535005 GAPVD1Q14C86 1478 aa20.36■□□□□ 0.85
SCARB1-204ENST00000535005 EIF4G3O43432 1585 aaKnown RBP20.33■□□□□ 0.84
SCARB1-204ENST00000535005 GRIN2BQ13224 1484 aa20.29■□□□□ 0.84
SCARB1-204ENST00000535005 IGF1RP08069 1367 aa20.29■□□□□ 0.84
SCARB1-204ENST00000535005 ERICH3Q5RHP9 1530 aa20.28■□□□□ 0.84
SCARB1-204ENST00000535005 CSRNP3Q8WYN3 585 aa20.27■□□□□ 0.84
SCARB1-204ENST00000535005 FAM9AQ8IZU1 332 aaPredicted RBP20.24■□□□□ 0.83
SCARB1-204ENST00000535005 PBRM1Q86U86 1689 aa20.23■□□□□ 0.83
SCARB1-204ENST00000535005 MAGI1Q96QZ7 1491 aaPredicted RBP20.19■□□□□ 0.82
SCARB1-204ENST00000535005 SNAPC4Q5SXM2 1469 aa20.17■□□□□ 0.82
SCARB1-204ENST00000535005 CUL7Q14999 1698 aa20.17■□□□□ 0.82
SCARB1-204ENST00000535005 PRXQ9BXM0 1461 aa20.16■□□□□ 0.82
SCARB1-204ENST00000535005 CARMIL1Q5VZK9 1371 aa20.16■□□□□ 0.82
SCARB1-204ENST00000535005 FHAD1B1AJZ9 1412 aa20.15■□□□□ 0.82
SCARB1-204ENST00000535005 ADAMTS12P58397 1594 aa20.13■□□□□ 0.81
SCARB1-204ENST00000535005 SYNJ2O15056 1496 aa20.1■□□□□ 0.81
SCARB1-204ENST00000535005 RAPGEF2Q9Y4G8 1499 aa20.09■□□□□ 0.81
SCARB1-204ENST00000535005 KIF21BO75037 1637 aa20.09■□□□□ 0.81
SCARB1-204ENST00000535005 CHMP7Q8WUX9 453 aaPredicted RBP20.04■□□□□ 0.8
SCARB1-204ENST00000535005 GRIN2AQ12879 1464 aa20.03■□□□□ 0.8
SCARB1-204ENST00000535005 GOLGA3Q08378 1498 aa20.01■□□□□ 0.79
SCARB1-204ENST00000535005 FBLN2P98095 1184 aa19.99■□□□□ 0.79
SCARB1-204ENST00000535005 CHD1O14646 1710 aa19.95■□□□□ 0.78
SCARB1-204ENST00000535005 NUP160Q12769 1436 aa19.93■□□□□ 0.78
SCARB1-204ENST00000535005 LOC105371045A0A1W2PR82 267 aa19.92■□□□□ 0.78
SCARB1-204ENST00000535005 UBTFP17480 764 aaKnown RBP19.9■□□□□ 0.78
SCARB1-204ENST00000535005 EHMT2Q96KQ7 1210 aa19.89■□□□□ 0.77
SCARB1-204ENST00000535005 CEP170Q5SW79 1584 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms