RNA–Protein interactions for RNA: ENST00000541661.5

SCARB1-207, Transcript of scavenger receptor class B member 1, humanhuman

TSL 5

Gene SCARB1, Length 476 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-207ENST00000541661 NISCHQ9Y2I1 1504 aa33.18■■■□□ 2.9
SCARB1-207ENST00000541661 ABCC9O60706 1549 aa29.96■■■□□ 2.39
SCARB1-207ENST00000541661 CCDC180Q9P1Z9 1646 aa29.87■■■□□ 2.37
SCARB1-207ENST00000541661 RB1CC1Q8TDY2 1594 aa28.5■■■□□ 2.15
SCARB1-207ENST00000541661 DNAJC5BQ9UF47 199 aa28.29■■■□□ 2.12
SCARB1-207ENST00000541661 NACADO15069 1562 aa28.28■■■□□ 2.12
SCARB1-207ENST00000541661 DCAF8L2P0C7V8 631 aa27.99■■■□□ 2.07
SCARB1-207ENST00000541661 MYO15BQ96JP2 1530 aa27.87■■■□□ 2.05
SCARB1-207ENST00000541661 UNC13AQ9UPW8 1703 aa27.87■■■□□ 2.05
SCARB1-207ENST00000541661 PABPN1Q86U42 306 aaKnown RBP eCLIP27.85■■■□□ 2.05
SCARB1-207ENST00000541661 BICRAQ9NZM4 1560 aa27.69■■■□□ 2.02
SCARB1-207ENST00000541661 ZCCHC6Q5VYS8 1495 aaKnown RBP27.45■■□□□ 1.99
SCARB1-207ENST00000541661 DCAF1Q9Y4B6 1507 aa27.44■■□□□ 1.98
SCARB1-207ENST00000541661 SHROOM4Q9ULL8 1493 aa27.32■■□□□ 1.96
SCARB1-207ENST00000541661 SCRIBQ14160 1630 aa27.13■■□□□ 1.93
SCARB1-207ENST00000541661 CC2D2AQ9P2K1 1620 aa27.09■■□□□ 1.93
SCARB1-207ENST00000541661 CECR2Q9BXF3 1484 aa27.03■■□□□ 1.92
SCARB1-207ENST00000541661 EIF4G1Q04637 1599 aaKnown RBP27■■□□□ 1.91
SCARB1-207ENST00000541661 DNAJC5Q9H3Z4 198 aa26.13■■□□□ 1.77
SCARB1-207ENST00000541661 NCAPD3P42695 1498 aa26.11■■□□□ 1.77
SCARB1-207ENST00000541661 ATAD2BQ9ULI0 1458 aa25.98■■□□□ 1.75
SCARB1-207ENST00000541661 CUX2O14529 1486 aa25.95■■□□□ 1.74
SCARB1-207ENST00000541661 SMARCA4P51532 1647 aa25.91■■□□□ 1.74
SCARB1-207ENST00000541661 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
SCARB1-207ENST00000541661 HMGXB3Q12766 1538 aa25.89■■□□□ 1.74
SCARB1-207ENST00000541661 ERCC6Q03468 1493 aa25.87■■□□□ 1.73
SCARB1-207ENST00000541661 BAZ1AQ9NRL2 1556 aaPredicted RBP25.76■■□□□ 1.71
SCARB1-207ENST00000541661 PEG3Q9GZU2 1588 aa25.7■■□□□ 1.71
SCARB1-207ENST00000541661 BAZ1BQ9UIG0 1483 aaKnown RBP25.7■■□□□ 1.7
SCARB1-207ENST00000541661 NESP48681 1621 aa25.7■■□□□ 1.7
SCARB1-207ENST00000541661 MROH2BQ7Z745 1585 aa25.54■■□□□ 1.68
SCARB1-207ENST00000541661 LAMC3Q9Y6N6 1575 aa25.54■■□□□ 1.68
SCARB1-207ENST00000541661 THOC2Q8NI27 1593 aaKnown RBP25.5■■□□□ 1.67
SCARB1-207ENST00000541661 KIF21AQ7Z4S6 1674 aa25.39■■□□□ 1.65
SCARB1-207ENST00000541661 PDS5BQ9NTI5 1447 aa25.38■■□□□ 1.65
SCARB1-207ENST00000541661 CADPSQ9ULU8 1353 aa25.29■■□□□ 1.64
SCARB1-207ENST00000541661 WIZO95785 1651 aa25.23■■□□□ 1.63
SCARB1-207ENST00000541661 MRC2Q9UBG0 1479 aa25.15■■□□□ 1.62
SCARB1-207ENST00000541661 WDR62O43379 1518 aa25.12■■□□□ 1.61
SCARB1-207ENST00000541661 CEP164Q9UPV0 1460 aa25.02■■□□□ 1.6
SCARB1-207ENST00000541661 FANCD2Q9BXW9 1451 aa24.98■■□□□ 1.59
SCARB1-207ENST00000541661 CFTRP13569 1480 aa24.97■■□□□ 1.59
SCARB1-207ENST00000541661 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.59
SCARB1-207ENST00000541661 TOP2AP11388 1531 aaKnown RBP24.91■■□□□ 1.58
SCARB1-207ENST00000541661 TRIM41Q8WV44 630 aa24.82■■□□□ 1.56
SCARB1-207ENST00000541661 URB2Q14146 1524 aaKnown RBP24.79■■□□□ 1.56
SCARB1-207ENST00000541661 PRDM2Q13029 1718 aa24.72■■□□□ 1.55
SCARB1-207ENST00000541661 OSCARQ8IYS5 282 aa24.72■■□□□ 1.55
SCARB1-207ENST00000541661 CCDC88BA6NC98 1476 aa24.63■■□□□ 1.53
SCARB1-207ENST00000541661 IFT140Q96RY7 1462 aa24.54■■□□□ 1.52
SCARB1-207ENST00000541661 TOPBP1Q92547 1522 aa24.5■■□□□ 1.51
SCARB1-207ENST00000541661 ZNF608Q9ULD9 1512 aaPredicted RBP24.5■■□□□ 1.51
SCARB1-207ENST00000541661 ABCC8Q09428 1581 aa24.46■■□□□ 1.51
SCARB1-207ENST00000541661 RIMBP3CA6NJZ7 1639 aa24.41■■□□□ 1.5
SCARB1-207ENST00000541661 RIMBP3BA6NNM3 1639 aa24.41■■□□□ 1.5
SCARB1-207ENST00000541661 RIMBP3Q9UFD9 1639 aa24.41■■□□□ 1.5
SCARB1-207ENST00000541661 DNMBPQ6XZF7 1577 aa24.4■■□□□ 1.5
SCARB1-207ENST00000541661 EIF4G3O43432 1585 aaKnown RBP24.36■■□□□ 1.49
SCARB1-207ENST00000541661 TARBP1Q13395 1621 aaKnown RBP24.32■■□□□ 1.48
SCARB1-207ENST00000541661 ARHGEF11O15085 1522 aa24.3■■□□□ 1.48
SCARB1-207ENST00000541661 AQRO60306 1485 aaKnown RBP eCLIP24.26■■□□□ 1.471e-8■■■■□ 22
SCARB1-207ENST00000541661 POLA1P09884 1462 aaPredicted RBP24.23■■□□□ 1.47
SCARB1-207ENST00000541661 CHD1O14646 1710 aa24.22■■□□□ 1.47
SCARB1-207ENST00000541661 RAD54L2Q9Y4B4 1467 aa24.13■■□□□ 1.45
SCARB1-207ENST00000541661 SOGA1O94964 1423 aa24.12■■□□□ 1.45
SCARB1-207ENST00000541661 CYB5RLQ6IPT4 315 aa24.12■■□□□ 1.45
SCARB1-207ENST00000541661 FBLN2P98095 1184 aa24.09■■□□□ 1.45
SCARB1-207ENST00000541661 WDR97A6NE52 1622 aa24.08■■□□□ 1.45
SCARB1-207ENST00000541661 TDRD9Q8NDG6 1382 aaKnown RBP24.07■■□□□ 1.44
SCARB1-207ENST00000541661 ARAP1Q96P48 1450 aa24.06■■□□□ 1.44
SCARB1-207ENST00000541661 FGD5Q6ZNL6 1462 aa24.04■■□□□ 1.44
SCARB1-207ENST00000541661 CUX1P39880 1505 aa24■■□□□ 1.43
SCARB1-207ENST00000541661 SNAPC4Q5SXM2 1469 aa24■■□□□ 1.43
SCARB1-207ENST00000541661 MAGI1Q96QZ7 1491 aaPredicted RBP23.96■■□□□ 1.43
SCARB1-207ENST00000541661 CLASP1Q7Z460 1538 aa23.95■■□□□ 1.43
SCARB1-207ENST00000541661 GRIN2BQ13224 1484 aa23.94■■□□□ 1.42
SCARB1-207ENST00000541661 CHMP7Q8WUX9 453 aaPredicted RBP23.92■■□□□ 1.42
SCARB1-207ENST00000541661 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
SCARB1-207ENST00000541661 SYNJ2O15056 1496 aa23.88■■□□□ 1.41
SCARB1-207ENST00000541661 TRHP20396 242 aaPredicted RBP23.88■■□□□ 1.41
SCARB1-207ENST00000541661 PBRM1Q86U86 1689 aa23.83■■□□□ 1.4
SCARB1-207ENST00000541661 GAPVD1Q14C86 1478 aa23.82■■□□□ 1.4
SCARB1-207ENST00000541661 ABCA10Q8WWZ4 1543 aa23.79■■□□□ 1.4
SCARB1-207ENST00000541661 ABCA5Q8WWZ7 1642 aa23.77■■□□□ 1.4
SCARB1-207ENST00000541661 SUPT5HO00267 1087 aaKnown RBP23.66■■□□□ 1.38
SCARB1-207ENST00000541661 WRNQ14191 1432 aaPredicted RBP eCLIP23.65■■□□□ 1.38
SCARB1-207ENST00000541661 GRIN2AQ12879 1464 aa23.62■■□□□ 1.37
SCARB1-207ENST00000541661 BIVM-ERCC5R4GMW8 1640 aa23.61■■□□□ 1.37
SCARB1-207ENST00000541661 TOP2BQ02880 1626 aa23.59■■□□□ 1.37
SCARB1-207ENST00000541661 ADAMTS12P58397 1594 aa23.58■■□□□ 1.37
SCARB1-207ENST00000541661 NUP160Q12769 1436 aa23.57■■□□□ 1.36
SCARB1-207ENST00000541661 CEP170Q5SW79 1584 aa23.55■■□□□ 1.36
SCARB1-207ENST00000541661 ERCC6L2Q5T890 1561 aa23.54■■□□□ 1.36
SCARB1-207ENST00000541661 FHAD1B1AJZ9 1412 aa23.52■■□□□ 1.36
SCARB1-207ENST00000541661 SHROOM2Q13796 1616 aa23.5■■□□□ 1.35
SCARB1-207ENST00000541661 ERICH3Q5RHP9 1530 aa23.49■■□□□ 1.35
SCARB1-207ENST00000541661 PRG4Q92954 1404 aaPredicted RBP23.33■■□□□ 1.32
SCARB1-207ENST00000541661 JPH4Q96JJ6 628 aa23.32■■□□□ 1.32
SCARB1-207ENST00000541661 AEBP2Q6ZN18 517 aaPredicted RBP23.31■■□□□ 1.32
SCARB1-207ENST00000541661 KIF13AQ9H1H9 1805 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms