RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 NISCHQ9Y2I1 1504 aa48.39■■■■■ 5.34
LIME1-201ENST00000309546 CCDC180Q9P1Z9 1646 aa43.33■■■■■ 4.53
LIME1-201ENST00000309546 ABCC9O60706 1549 aa43.01■■■■■ 4.48
LIME1-201ENST00000309546 RB1CC1Q8TDY2 1594 aa41.07■■■■■ 4.16
LIME1-201ENST00000309546 NACADO15069 1562 aa40.84■■■■■ 4.13
LIME1-201ENST00000309546 DCAF8L2P0C7V8 631 aa40.75■■■■■ 4.11
LIME1-201ENST00000309546 MYO15BQ96JP2 1530 aa40.33■■■■■ 4.05
LIME1-201ENST00000309546 UNC13AQ9UPW8 1703 aa40.22■■■■■ 4.03
LIME1-201ENST00000309546 ZCCHC6Q5VYS8 1495 aaKnown RBP40.19■■■■■ 4.03
LIME1-201ENST00000309546 PABPN1Q86U42 306 aaKnown RBP eCLIP40.06■■■■■ 42e-9■■■■□ 23.4
LIME1-201ENST00000309546 DCAF1Q9Y4B6 1507 aa39.96■■■■□ 3.99
LIME1-201ENST00000309546 DNAJC5BQ9UF47 199 aa39.95■■■■□ 3.99
LIME1-201ENST00000309546 BICRAQ9NZM4 1560 aa39.84■■■■□ 3.97
LIME1-201ENST00000309546 SCRIBQ14160 1630 aa39.56■■■■□ 3.92
LIME1-201ENST00000309546 SHROOM4Q9ULL8 1493 aa39.3■■■■□ 3.88
LIME1-201ENST00000309546 CC2D2AQ9P2K1 1620 aa38.87■■■■□ 3.81
LIME1-201ENST00000309546 EIF4G1Q04637 1599 aaKnown RBP38.86■■■■□ 3.81
LIME1-201ENST00000309546 CECR2Q9BXF3 1484 aa38.68■■■■□ 3.78
LIME1-201ENST00000309546 SMARCA4P51532 1647 aa37.73■■■■□ 3.63
LIME1-201ENST00000309546 NCAPD3P42695 1498 aa37.65■■■■□ 3.62
LIME1-201ENST00000309546 ATAD2BQ9ULI0 1458 aa37.62■■■■□ 3.61
LIME1-201ENST00000309546 SMARCA2P51531 1590 aa37.57■■■■□ 3.6
LIME1-201ENST00000309546 BAZ1AQ9NRL2 1556 aaPredicted RBP37.57■■■■□ 3.6
LIME1-201ENST00000309546 HMGXB3Q12766 1538 aa37.46■■■■□ 3.59
LIME1-201ENST00000309546 BAZ1BQ9UIG0 1483 aaKnown RBP37.33■■■■□ 3.57
LIME1-201ENST00000309546 MROH2BQ7Z745 1585 aa37.31■■■■□ 3.56
LIME1-201ENST00000309546 PEG3Q9GZU2 1588 aa37.3■■■■□ 3.56
LIME1-201ENST00000309546 ERCC6Q03468 1493 aa37.13■■■■□ 3.53
LIME1-201ENST00000309546 NESP48681 1621 aa37.03■■■■□ 3.52
LIME1-201ENST00000309546 WIZO95785 1651 aa36.93■■■■□ 3.5
LIME1-201ENST00000309546 CUX2O14529 1486 aa36.88■■■■□ 3.5
LIME1-201ENST00000309546 LAMC3Q9Y6N6 1575 aa36.82■■■■□ 3.48
LIME1-201ENST00000309546 RSF1Q96T23 1441 aaPredicted RBP36.63■■■■□ 3.45
LIME1-201ENST00000309546 KIF21AQ7Z4S6 1674 aa36.63■■■■□ 3.45
LIME1-201ENST00000309546 THOC2Q8NI27 1593 aaKnown RBP36.61■■■■□ 3.45
LIME1-201ENST00000309546 PDS5BQ9NTI5 1447 aa36.57■■■■□ 3.44
LIME1-201ENST00000309546 CADPSQ9ULU8 1353 aa36.54■■■■□ 3.44
LIME1-201ENST00000309546 TOP2AP11388 1531 aaKnown RBP36.46■■■■□ 3.43
LIME1-201ENST00000309546 DNAJC5Q9H3Z4 198 aa36.41■■■■□ 3.42
LIME1-201ENST00000309546 MRC2Q9UBG0 1479 aa36.26■■■■□ 3.4
LIME1-201ENST00000309546 CFTRP13569 1480 aa36.2■■■■□ 3.39
LIME1-201ENST00000309546 CEP164Q9UPV0 1460 aa36.2■■■■□ 3.39
LIME1-201ENST00000309546 FANCD2Q9BXW9 1451 aa36.18■■■■□ 3.38
LIME1-201ENST00000309546 WDR62O43379 1518 aa36.16■■■■□ 3.38
LIME1-201ENST00000309546 CCDC88BA6NC98 1476 aa36.02■■■■□ 3.36
LIME1-201ENST00000309546 PRDM2Q13029 1718 aa36■■■■□ 3.35
LIME1-201ENST00000309546 URB2Q14146 1524 aaKnown RBP35.86■■■■□ 3.33
LIME1-201ENST00000309546 TOPBP1Q92547 1522 aa35.53■■■■□ 3.28
LIME1-201ENST00000309546 DNMBPQ6XZF7 1577 aa35.45■■■■□ 3.27
LIME1-201ENST00000309546 ABCC8Q09428 1581 aa35.44■■■■□ 3.26
LIME1-201ENST00000309546 IFT140Q96RY7 1462 aa35.44■■■■□ 3.26
LIME1-201ENST00000309546 ZNF608Q9ULD9 1512 aaPredicted RBP35.37■■■■□ 3.25
LIME1-201ENST00000309546 SUPT5HO00267 1087 aaKnown RBP35.33■■■■□ 3.25
LIME1-201ENST00000309546 EIF4G3O43432 1585 aaKnown RBP35.24■■■■□ 3.23
LIME1-201ENST00000309546 OSCARQ8IYS5 282 aa35.22■■■■□ 3.23
LIME1-201ENST00000309546 POLA1P09884 1462 aaPredicted RBP35.19■■■■□ 3.22
LIME1-201ENST00000309546 TARBP1Q13395 1621 aaKnown RBP35.19■■■■□ 3.22
LIME1-201ENST00000309546 TRIM41Q8WV44 630 aa35.07■■■■□ 3.2
LIME1-201ENST00000309546 AQRO60306 1485 aaKnown RBP eCLIP35.07■■■■□ 3.26e-6■■■■□ 25.1
LIME1-201ENST00000309546 RAD54L2Q9Y4B4 1467 aa35.07■■■■□ 3.2
LIME1-201ENST00000309546 CUX1P39880 1505 aa35.05■■■■□ 3.2
LIME1-201ENST00000309546 FGD5Q6ZNL6 1462 aa35.03■■■■□ 3.2
LIME1-201ENST00000309546 SOGA1O94964 1423 aa35.02■■■■□ 3.2
LIME1-201ENST00000309546 CHD1O14646 1710 aa34.95■■■■□ 3.18
LIME1-201ENST00000309546 TDRD9Q8NDG6 1382 aaKnown RBP34.91■■■■□ 3.18
LIME1-201ENST00000309546 WDR97A6NE52 1622 aa34.85■■■■□ 3.17
LIME1-201ENST00000309546 RIMBP3CA6NJZ7 1639 aa34.82■■■■□ 3.16
LIME1-201ENST00000309546 RIMBP3BA6NNM3 1639 aa34.82■■■■□ 3.16
LIME1-201ENST00000309546 RIMBP3Q9UFD9 1639 aa34.82■■■■□ 3.16
LIME1-201ENST00000309546 FBLN2P98095 1184 aa34.81■■■■□ 3.16
LIME1-201ENST00000309546 SNAPC4Q5SXM2 1469 aa34.77■■■■□ 3.16
LIME1-201ENST00000309546 ARHGEF11O15085 1522 aa34.71■■■■□ 3.15
LIME1-201ENST00000309546 GRIN2BQ13224 1484 aa34.68■■■■□ 3.14
LIME1-201ENST00000309546 PBRM1Q86U86 1689 aa34.66■■■■□ 3.14
LIME1-201ENST00000309546 MAGI1Q96QZ7 1491 aaPredicted RBP34.65■■■■□ 3.14
LIME1-201ENST00000309546 ABCA10Q8WWZ4 1543 aa34.63■■■■□ 3.13
LIME1-201ENST00000309546 GAPVD1Q14C86 1478 aa34.61■■■■□ 3.13
LIME1-201ENST00000309546 BIVM-ERCC5R4GMW8 1640 aa34.6■■■■□ 3.13
LIME1-201ENST00000309546 WRNQ14191 1432 aaPredicted RBP eCLIP34.59■■■■□ 3.13
LIME1-201ENST00000309546 TOP2BQ02880 1626 aa34.59■■■■□ 3.13
LIME1-201ENST00000309546 ABCA5Q8WWZ7 1642 aa34.59■■■■□ 3.13
LIME1-201ENST00000309546 SYNJ1O43426 1573 aa34.58■■■■□ 3.13
LIME1-201ENST00000309546 CHMP7Q8WUX9 453 aaPredicted RBP34.58■■■■□ 3.13
LIME1-201ENST00000309546 SYNJ2O15056 1496 aa34.53■■■■□ 3.12
LIME1-201ENST00000309546 CLASP1Q7Z460 1538 aa34.47■■■■□ 3.11
LIME1-201ENST00000309546 CYB5RLQ6IPT4 315 aa34.41■■■■□ 3.1
LIME1-201ENST00000309546 ARAP1Q96P48 1450 aa34.39■■■■□ 3.1
LIME1-201ENST00000309546 ADAMTS12P58397 1594 aa34.32■■■■□ 3.08
LIME1-201ENST00000309546 GRIN2AQ12879 1464 aa34.25■■■■□ 3.07
LIME1-201ENST00000309546 ERICH3Q5RHP9 1530 aa34.2■■■■□ 3.07
LIME1-201ENST00000309546 FHAD1B1AJZ9 1412 aa34.17■■■■□ 3.06
LIME1-201ENST00000309546 CEP170Q5SW79 1584 aa34.15■■■■□ 3.06
LIME1-201ENST00000309546 NUP160Q12769 1436 aa34.09■■■■□ 3.05
LIME1-201ENST00000309546 ERCC6L2Q5T890 1561 aa33.98■■■■□ 3.03
LIME1-201ENST00000309546 TRHP20396 242 aaPredicted RBP33.97■■■■□ 3.03
LIME1-201ENST00000309546 SHROOM2Q13796 1616 aa33.94■■■■□ 3.02
LIME1-201ENST00000309546 KIF27Q86VH2 1401 aa33.9■■■■□ 3.02
LIME1-201ENST00000309546 CUL7Q14999 1698 aa33.83■■■■□ 3.01
LIME1-201ENST00000309546 RUSC2Q8N2Y8 1516 aa33.83■■■■□ 3.01
LIME1-201ENST00000309546 IGF1RP08069 1367 aa33.79■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms