RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 NISCHQ9Y2I1 1504 aa47.54■■■■■ 5.2
LIME1-205ENST00000480139 CCDC180Q9P1Z9 1646 aa42.22■■■■■ 4.35
LIME1-205ENST00000480139 ABCC9O60706 1549 aa40.8■■■■■ 4.12
LIME1-205ENST00000480139 ZCCHC6Q5VYS8 1495 aaKnown RBP39.69■■■■□ 3.94
LIME1-205ENST00000480139 NACADO15069 1562 aa39.56■■■■□ 3.92
LIME1-205ENST00000480139 RB1CC1Q8TDY2 1594 aa39.51■■■■□ 3.92
LIME1-205ENST00000480139 MYO15BQ96JP2 1530 aa39.5■■■■□ 3.91
LIME1-205ENST00000480139 DCAF1Q9Y4B6 1507 aa39.43■■■■□ 3.9
LIME1-205ENST00000480139 DCAF8L2P0C7V8 631 aa39.36■■■■□ 3.89
LIME1-205ENST00000480139 UNC13AQ9UPW8 1703 aa38.64■■■■□ 3.78
LIME1-205ENST00000480139 SCRIBQ14160 1630 aa38.41■■■■□ 3.74
LIME1-205ENST00000480139 BICRAQ9NZM4 1560 aa38.29■■■■□ 3.72
LIME1-205ENST00000480139 PABPN1Q86U42 306 aaKnown RBP eCLIP38.11■■■■□ 3.692e-9■■■■■ 28.5
LIME1-205ENST00000480139 SHROOM4Q9ULL8 1493 aa38.03■■■■□ 3.68
LIME1-205ENST00000480139 EIF4G1Q04637 1599 aaKnown RBP37.25■■■■□ 3.55
LIME1-205ENST00000480139 DNAJC5BQ9UF47 199 aa37.09■■■■□ 3.53
LIME1-205ENST00000480139 CC2D2AQ9P2K1 1620 aa36.99■■■■□ 3.51
LIME1-205ENST00000480139 CECR2Q9BXF3 1484 aa36.93■■■■□ 3.5
LIME1-205ENST00000480139 BAZ1AQ9NRL2 1556 aaPredicted RBP36.84■■■■□ 3.49
LIME1-205ENST00000480139 SMARCA4P51532 1647 aa36.84■■■■□ 3.49
LIME1-205ENST00000480139 MROH2BQ7Z745 1585 aa36.61■■■■□ 3.45
LIME1-205ENST00000480139 SMARCA2P51531 1590 aa36.53■■■■□ 3.44
LIME1-205ENST00000480139 PEG3Q9GZU2 1588 aa36.53■■■■□ 3.44
LIME1-205ENST00000480139 ATAD2BQ9ULI0 1458 aa36.51■■■■□ 3.44
LIME1-205ENST00000480139 NCAPD3P42695 1498 aa36.48■■■■□ 3.43
LIME1-205ENST00000480139 HMGXB3Q12766 1538 aa36.37■■■■□ 3.41
LIME1-205ENST00000480139 RSF1Q96T23 1441 aaPredicted RBP36.3■■■■□ 3.4
LIME1-205ENST00000480139 WIZO95785 1651 aa36.24■■■■□ 3.39
LIME1-205ENST00000480139 BAZ1BQ9UIG0 1483 aaKnown RBP36.23■■■■□ 3.39
LIME1-205ENST00000480139 TOP2AP11388 1531 aaKnown RBP35.92■■■■□ 3.34
LIME1-205ENST00000480139 SUPT5HO00267 1087 aaKnown RBP35.49■■■■□ 3.27
LIME1-205ENST00000480139 LAMC3Q9Y6N6 1575 aa35.49■■■■□ 3.27
LIME1-205ENST00000480139 CCDC88BA6NC98 1476 aa35.43■■■■□ 3.26
LIME1-205ENST00000480139 NESP48681 1621 aa35.42■■■■□ 3.26
LIME1-205ENST00000480139 CADPSQ9ULU8 1353 aa35.38■■■■□ 3.26
LIME1-205ENST00000480139 CFTRP13569 1480 aa35.29■■■■□ 3.24
LIME1-205ENST00000480139 PDS5BQ9NTI5 1447 aa35.18■■■■□ 3.22
LIME1-205ENST00000480139 ERCC6Q03468 1493 aa35.16■■■■□ 3.22
LIME1-205ENST00000480139 PRDM2Q13029 1718 aa35.15■■■■□ 3.22
LIME1-205ENST00000480139 KIF21AQ7Z4S6 1674 aa35.09■■■■□ 3.21
LIME1-205ENST00000480139 FANCD2Q9BXW9 1451 aa34.98■■■■□ 3.19
LIME1-205ENST00000480139 CEP164Q9UPV0 1460 aa34.92■■■■□ 3.18
LIME1-205ENST00000480139 THOC2Q8NI27 1593 aaKnown RBP34.91■■■■□ 3.18
LIME1-205ENST00000480139 MRC2Q9UBG0 1479 aa34.81■■■■□ 3.16
LIME1-205ENST00000480139 CUX2O14529 1486 aa34.76■■■■□ 3.15
LIME1-205ENST00000480139 WDR62O43379 1518 aa34.72■■■■□ 3.15
LIME1-205ENST00000480139 URB2Q14146 1524 aaKnown RBP34.61■■■■□ 3.13
LIME1-205ENST00000480139 ABCC8Q09428 1581 aa34.54■■■■□ 3.12
LIME1-205ENST00000480139 DNMBPQ6XZF7 1577 aa34.5■■■■□ 3.11
LIME1-205ENST00000480139 TOPBP1Q92547 1522 aa34.47■■■■□ 3.11
LIME1-205ENST00000480139 CUX1P39880 1505 aa34.33■■■■□ 3.09
LIME1-205ENST00000480139 WRNQ14191 1432 aaPredicted RBP eCLIP34.22■■■■□ 3.07
LIME1-205ENST00000480139 POLA1P09884 1462 aaPredicted RBP34.2■■■■□ 3.07
LIME1-205ENST00000480139 BIVM-ERCC5R4GMW8 1640 aa34.19■■■■□ 3.06
LIME1-205ENST00000480139 IFT140Q96RY7 1462 aa34.19■■■■□ 3.06
LIME1-205ENST00000480139 TOP2BQ02880 1626 aa34.17■■■■□ 3.06
LIME1-205ENST00000480139 FGD5Q6ZNL6 1462 aa34.15■■■■□ 3.06
LIME1-205ENST00000480139 SYNJ1O43426 1573 aa34.14■■■■□ 3.06
LIME1-205ENST00000480139 TARBP1Q13395 1621 aaKnown RBP34.12■■■■□ 3.05
LIME1-205ENST00000480139 SOGA1O94964 1423 aa34.03■■■■□ 3.04
LIME1-205ENST00000480139 RAD54L2Q9Y4B4 1467 aa33.99■■■■□ 3.03
LIME1-205ENST00000480139 WDR97A6NE52 1622 aa33.96■■■■□ 3.03
LIME1-205ENST00000480139 ZNF608Q9ULD9 1512 aaPredicted RBP33.94■■■■□ 3.02
LIME1-205ENST00000480139 EIF4G3O43432 1585 aaKnown RBP33.9■■■■□ 3.02
LIME1-205ENST00000480139 ABCA10Q8WWZ4 1543 aa33.88■■■■□ 3.01
LIME1-205ENST00000480139 AQRO60306 1485 aaKnown RBP eCLIP33.78■■■■□ 36e-6■■■■□ 25.1
LIME1-205ENST00000480139 TDRD9Q8NDG6 1382 aaKnown RBP33.76■■■■□ 3
LIME1-205ENST00000480139 ABCA5Q8WWZ7 1642 aa33.75■■■□□ 2.99
LIME1-205ENST00000480139 GAPVD1Q14C86 1478 aa33.67■■■□□ 2.98
LIME1-205ENST00000480139 PBRM1Q86U86 1689 aa33.64■■■□□ 2.98
LIME1-205ENST00000480139 GRIN2BQ13224 1484 aa33.63■■■□□ 2.97
LIME1-205ENST00000480139 TRIM41Q8WV44 630 aa33.56■■■□□ 2.96
LIME1-205ENST00000480139 MAGI1Q96QZ7 1491 aaPredicted RBP33.54■■■□□ 2.96
LIME1-205ENST00000480139 SNAPC4Q5SXM2 1469 aa33.52■■■□□ 2.96
LIME1-205ENST00000480139 ERICH3Q5RHP9 1530 aa33.5■■■□□ 2.95
LIME1-205ENST00000480139 KIF27Q86VH2 1401 aa33.49■■■□□ 2.95
LIME1-205ENST00000480139 CHD1O14646 1710 aa33.41■■■□□ 2.94
LIME1-205ENST00000480139 SYNJ2O15056 1496 aa33.39■■■□□ 2.94
LIME1-205ENST00000480139 ADAMTS12P58397 1594 aa33.38■■■□□ 2.93
LIME1-205ENST00000480139 CHIC1Q5VXU3 224 aa33.37■■■□□ 2.93
LIME1-205ENST00000480139 FHAD1B1AJZ9 1412 aa33.3■■■□□ 2.92
LIME1-205ENST00000480139 IGF1RP08069 1367 aa33.28■■■□□ 2.92
LIME1-205ENST00000480139 CUL7Q14999 1698 aa33.28■■■□□ 2.92
LIME1-205ENST00000480139 OSCARQ8IYS5 282 aa33.27■■■□□ 2.92
LIME1-205ENST00000480139 CHMP7Q8WUX9 453 aaPredicted RBP33.25■■■□□ 2.91
LIME1-205ENST00000480139 FBLN2P98095 1184 aa33.23■■■□□ 2.91
LIME1-205ENST00000480139 RUSC2Q8N2Y8 1516 aa33.23■■■□□ 2.91
LIME1-205ENST00000480139 GRIN2AQ12879 1464 aa33.21■■■□□ 2.91
LIME1-205ENST00000480139 DNAJC5Q9H3Z4 198 aa33.2■■■□□ 2.91
LIME1-205ENST00000480139 EEA1Q15075 1411 aa33.11■■■□□ 2.89
LIME1-205ENST00000480139 CARMIL1Q5VZK9 1371 aa33.09■■■□□ 2.89
LIME1-205ENST00000480139 CLASP1Q7Z460 1538 aa33.07■■■□□ 2.88
LIME1-205ENST00000480139 NUP160Q12769 1436 aa33.06■■■□□ 2.88
LIME1-205ENST00000480139 CEP170Q5SW79 1584 aa33.03■■■□□ 2.88
LIME1-205ENST00000480139 RAPGEF2Q9Y4G8 1499 aa32.97■■■□□ 2.87
LIME1-205ENST00000480139 PRXQ9BXM0 1461 aa32.95■■■□□ 2.87
LIME1-205ENST00000480139 CSRNP3Q8WYN3 585 aa32.92■■■□□ 2.86
LIME1-205ENST00000480139 SHROOM2Q13796 1616 aa32.82■■■□□ 2.84
LIME1-205ENST00000480139 KIAA0586Q9BVV6 1533 aa32.82■■■□□ 2.84
LIME1-205ENST00000480139 ARHGEF11O15085 1522 aa32.79■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms