RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 NISCHQ9Y2I1 1504 aa46.4■■■■■ 5.02
LIME1-210ENST00000621325 CCDC180Q9P1Z9 1646 aa39.9■■■■□ 3.98
LIME1-210ENST00000621325 ZCCHC6Q5VYS8 1495 aaKnown RBP39.1■■■■□ 3.85
LIME1-210ENST00000621325 SHROOM4Q9ULL8 1493 aa38.78■■■■□ 3.8
LIME1-210ENST00000621325 DCAF8L2P0C7V8 631 aa38.5■■■■□ 3.75
LIME1-210ENST00000621325 DCAF1Q9Y4B6 1507 aa38.16■■■■□ 3.7
LIME1-210ENST00000621325 SUPT5HO00267 1087 aaKnown RBP37.63■■■■□ 3.61
LIME1-210ENST00000621325 ABCC9O60706 1549 aa37.53■■■■□ 3.6
LIME1-210ENST00000621325 MYO15BQ96JP2 1530 aa37.38■■■■□ 3.57
LIME1-210ENST00000621325 SCRIBQ14160 1630 aa37.14■■■■□ 3.54
LIME1-210ENST00000621325 NACADO15069 1562 aa37.07■■■■□ 3.52
LIME1-210ENST00000621325 RB1CC1Q8TDY2 1594 aa36.62■■■■□ 3.45
LIME1-210ENST00000621325 RSF1Q96T23 1441 aaPredicted RBP36.38■■■■□ 3.41
LIME1-210ENST00000621325 CHIC1Q5VXU3 224 aa36.27■■■■□ 3.4
LIME1-210ENST00000621325 CECR2Q9BXF3 1484 aa36.2■■■■□ 3.39
LIME1-210ENST00000621325 UNC13AQ9UPW8 1703 aa36.02■■■■□ 3.36
LIME1-210ENST00000621325 MROH2BQ7Z745 1585 aa36■■■■□ 3.35
LIME1-210ENST00000621325 WIZO95785 1651 aa35.75■■■■□ 3.31
LIME1-210ENST00000621325 BAZ1AQ9NRL2 1556 aaPredicted RBP35.71■■■■□ 3.31
LIME1-210ENST00000621325 PABPN1Q86U42 306 aaKnown RBP eCLIP35.68■■■■□ 3.32e-9■■■■□ 23.4
LIME1-210ENST00000621325 BICRAQ9NZM4 1560 aa35.65■■■■□ 3.3
LIME1-210ENST00000621325 SMARCA4P51532 1647 aa35.51■■■■□ 3.27
LIME1-210ENST00000621325 TOP2AP11388 1531 aaKnown RBP35.23■■■■□ 3.23
LIME1-210ENST00000621325 TRIM41Q8WV44 630 aa35.17■■■■□ 3.22
LIME1-210ENST00000621325 LOC105371045A0A1W2PR82 267 aa35.1■■■■□ 3.21
LIME1-210ENST00000621325 CCDC88BA6NC98 1476 aa35.03■■■■□ 3.2
LIME1-210ENST00000621325 SMARCA2P51531 1590 aa35■■■■□ 3.19
LIME1-210ENST00000621325 EIF4G1Q04637 1599 aaKnown RBP34.97■■■■□ 3.19
LIME1-210ENST00000621325 PEG3Q9GZU2 1588 aa34.92■■■■□ 3.18
LIME1-210ENST00000621325 ATAD2BQ9ULI0 1458 aa34.8■■■■□ 3.16
LIME1-210ENST00000621325 FAM9AQ8IZU1 332 aaPredicted RBP34.78■■■■□ 3.16
LIME1-210ENST00000621325 BAZ1BQ9UIG0 1483 aaKnown RBP34.63■■■■□ 3.13
LIME1-210ENST00000621325 ABCC8Q09428 1581 aa34.62■■■■□ 3.13
LIME1-210ENST00000621325 EHMT2Q96KQ7 1210 aa34.43■■■■□ 3.1
LIME1-210ENST00000621325 NCAPD3P42695 1498 aa34.3■■■■□ 3.08
LIME1-210ENST00000621325 HMGXB3Q12766 1538 aa34.23■■■■□ 3.07
LIME1-210ENST00000621325 PCGF6Q9BYE7 350 aa34.2■■■■□ 3.06
LIME1-210ENST00000621325 WRNQ14191 1432 aaPredicted RBP eCLIP34.18■■■■□ 3.06
LIME1-210ENST00000621325 SOGA1O94964 1423 aa34.14■■■■□ 3.06
LIME1-210ENST00000621325 SYNJ1O43426 1573 aa34.05■■■■□ 3.04
LIME1-210ENST00000621325 RUSC2Q8N2Y8 1516 aa34.02■■■■□ 3.04
LIME1-210ENST00000621325 EEA1Q15075 1411 aa33.88■■■■□ 3.01
LIME1-210ENST00000621325 CSRNP3Q8WYN3 585 aa33.87■■■■□ 3.01
LIME1-210ENST00000621325 CC2D2AQ9P2K1 1620 aa33.84■■■■□ 3.01
LIME1-210ENST00000621325 TRIM26Q12899 539 aaPredicted RBP33.8■■■■□ 3
LIME1-210ENST00000621325 CFTRP13569 1480 aa33.77■■■■□ 3
LIME1-210ENST00000621325 TOP2BQ02880 1626 aa33.73■■■□□ 2.99
LIME1-210ENST00000621325 HRCP23327 699 aa33.66■■■□□ 2.98
LIME1-210ENST00000621325 BIVM-ERCC5R4GMW8 1640 aa33.63■■■□□ 2.97
LIME1-210ENST00000621325 TNIKQ9UKE5 1360 aa33.63■■■□□ 2.97
LIME1-210ENST00000621325 UBTFP17480 764 aaKnown RBP33.6■■■□□ 2.97
LIME1-210ENST00000621325 CEP162Q5TB80 1403 aa33.59■■■□□ 2.97
LIME1-210ENST00000621325 CUX1P39880 1505 aa33.58■■■□□ 2.97
LIME1-210ENST00000621325 GOLGA3Q08378 1498 aa33.58■■■□□ 2.97
LIME1-210ENST00000621325 CADPSQ9ULU8 1353 aa33.54■■■□□ 2.96
LIME1-210ENST00000621325 PPARGC1BQ86YN6 1023 aaKnown RBP33.51■■■□□ 2.96
LIME1-210ENST00000621325 CEP164Q9UPV0 1460 aa33.49■■■□□ 2.95
LIME1-210ENST00000621325 KIF21BO75037 1637 aa33.46■■■□□ 2.95
LIME1-210ENST00000621325 PRDM2Q13029 1718 aa33.46■■■□□ 2.95
LIME1-210ENST00000621325 RAPGEF2Q9Y4G8 1499 aa33.36■■■□□ 2.93
LIME1-210ENST00000621325 NESP48681 1621 aa33.21■■■□□ 2.91
LIME1-210ENST00000621325 FANCD2Q9BXW9 1451 aa33.2■■■□□ 2.91
LIME1-210ENST00000621325 KIF27Q86VH2 1401 aa33.2■■■□□ 2.91
LIME1-210ENST00000621325 PRXQ9BXM0 1461 aa33.18■■■□□ 2.9
LIME1-210ENST00000621325 DNAJC5BQ9UF47 199 aa33.17■■■□□ 2.9
LIME1-210ENST00000621325 CLIP1P30622 1438 aa33.15■■■□□ 2.9
LIME1-210ENST00000621325 TTBK1Q5TCY1 1321 aaPredicted RBP33.11■■■□□ 2.89
LIME1-210ENST00000621325 FGD5Q6ZNL6 1462 aa33.1■■■□□ 2.89
LIME1-210ENST00000621325 ERICH3Q5RHP9 1530 aa33.09■■■□□ 2.89
LIME1-210ENST00000621325 RANGAP1P46060 587 aaPredicted RBP33.08■■■□□ 2.89
LIME1-210ENST00000621325 CUX2O14529 1486 aa33.05■■■□□ 2.88
LIME1-210ENST00000621325 LAMC3Q9Y6N6 1575 aa32.95■■■□□ 2.86
LIME1-210ENST00000621325 IGF1RP08069 1367 aa32.93■■■□□ 2.86
LIME1-210ENST00000621325 DNMBPQ6XZF7 1577 aa32.93■■■□□ 2.86
LIME1-210ENST00000621325 TOPBP1Q92547 1522 aa32.91■■■□□ 2.86
LIME1-210ENST00000621325 VPS8Q8N3P4 1428 aa32.91■■■□□ 2.86
LIME1-210ENST00000621325 RAD54L2Q9Y4B4 1467 aa32.85■■■□□ 2.85
LIME1-210ENST00000621325 POLA1P09884 1462 aaPredicted RBP32.84■■■□□ 2.85
LIME1-210ENST00000621325 PELP1Q8IZL8 1130 aaKnown RBP32.8■■■□□ 2.84
LIME1-210ENST00000621325 URB2Q14146 1524 aaKnown RBP32.78■■■□□ 2.84
LIME1-210ENST00000621325 CARMIL1Q5VZK9 1371 aa32.76■■■□□ 2.83
LIME1-210ENST00000621325 ARAP1Q96P48 1450 aa32.75■■■□□ 2.83
LIME1-210ENST00000621325 PDS5BQ9NTI5 1447 aa32.74■■■□□ 2.83
LIME1-210ENST00000621325 ABCA10Q8WWZ4 1543 aa32.73■■■□□ 2.83
LIME1-210ENST00000621325 ZEB1P37275 1124 aaPredicted RBP32.67■■■□□ 2.82
LIME1-210ENST00000621325 KIF21AQ7Z4S6 1674 aa32.65■■■□□ 2.82
LIME1-210ENST00000621325 APLP2Q06481 763 aa32.64■■■□□ 2.82
LIME1-210ENST00000621325 ARHGAP35Q9NRY4 1499 aa32.6■■■□□ 2.81
LIME1-210ENST00000621325 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.6■■■□□ 2.81
LIME1-210ENST00000621325 WDR97A6NE52 1622 aa32.51■■■□□ 2.79
LIME1-210ENST00000621325 TDRD9Q8NDG6 1382 aaKnown RBP32.49■■■□□ 2.79
LIME1-210ENST00000621325 CCER1Q8TC90 406 aaPredicted RBP32.45■■■□□ 2.78
LIME1-210ENST00000621325 KANK4Q5T7N3 995 aaPredicted RBP32.41■■■□□ 2.78
LIME1-210ENST00000621325 CUL7Q14999 1698 aa32.4■■■□□ 2.78
LIME1-210ENST00000621325 ABCA5Q8WWZ7 1642 aa32.39■■■□□ 2.78
LIME1-210ENST00000621325 GAPVD1Q14C86 1478 aa32.36■■■□□ 2.77
LIME1-210ENST00000621325 HNRNPUL2Q1KMD3 747 aaKnown RBP32.34■■■□□ 2.77
LIME1-210ENST00000621325 TARBP1Q13395 1621 aaKnown RBP32.32■■■□□ 2.76
LIME1-210ENST00000621325 MRC2Q9UBG0 1479 aa32.3■■■□□ 2.76
LIME1-210ENST00000621325 P3H3Q8IVL6 736 aa32.28■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms