RNA–Protein interactions for RNA: ENST00000277537.10

SEC16A-201, Transcript of SEC16 homolog A, endoplasmic reticulum export factor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SEC16A, Length 3,910 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC16A-201ENST00000277537 NISCHQ9Y2I1 1504 aa18.08■□□□□ 0.48
SEC16A-201ENST00000277537 DCAF8L2P0C7V8 631 aa16.47■□□□□ 0.23
SEC16A-201ENST00000277537 SHROOM4Q9ULL8 1493 aa16.08■□□□□ 0.17
SEC16A-201ENST00000277537 SUPT5HO00267 1087 aaKnown RBP15.83■□□□□ 0.13
SEC16A-201ENST00000277537 CCDC180Q9P1Z9 1646 aa15.15■□□□□ 0.02
SEC16A-201ENST00000277537 ABCC9O60706 1549 aa15.12■□□□□ 0.01
SEC16A-201ENST00000277537 ZCCHC6Q5VYS8 1495 aaKnown RBP15.11■□□□□ 0.01
SEC16A-201ENST00000277537 EHMT2Q96KQ7 1210 aa14.9□□□□□ -0.02
SEC16A-201ENST00000277537 FAM9AQ8IZU1 332 aaPredicted RBP14.78□□□□□ -0.04
SEC16A-201ENST00000277537 CHIC1Q5VXU3 224 aa14.73□□□□□ -0.05
SEC16A-201ENST00000277537 SCRIBQ14160 1630 aa14.69□□□□□ -0.06
SEC16A-201ENST00000277537 PABPN1Q86U42 306 aaKnown RBP eCLIP14.69□□□□□ -0.06
SEC16A-201ENST00000277537 TRIM41Q8WV44 630 aa14.65□□□□□ -0.06
SEC16A-201ENST00000277537 LOC105371045A0A1W2PR82 267 aa14.53□□□□□ -0.08
SEC16A-201ENST00000277537 DCAF1Q9Y4B6 1507 aa14.52□□□□□ -0.09
SEC16A-201ENST00000277537 PCGF6Q9BYE7 350 aa14.43□□□□□ -0.1
SEC16A-201ENST00000277537 NACADO15069 1562 aa14.37□□□□□ -0.11
SEC16A-201ENST00000277537 RSF1Q96T23 1441 aaPredicted RBP14.33□□□□□ -0.12
SEC16A-201ENST00000277537 RB1CC1Q8TDY2 1594 aa14.32□□□□□ -0.12
SEC16A-201ENST00000277537 TTBK1Q5TCY1 1321 aaPredicted RBP14.31□□□□□ -0.12
SEC16A-201ENST00000277537 CECR2Q9BXF3 1484 aa14.27□□□□□ -0.12
SEC16A-201ENST00000277537 RANGAP1P46060 587 aaPredicted RBP14.26□□□□□ -0.13
SEC16A-201ENST00000277537 PPARGC1BQ86YN6 1023 aaKnown RBP14.23□□□□□ -0.13
SEC16A-201ENST00000277537 UBTFP17480 764 aaKnown RBP14.2□□□□□ -0.14
SEC16A-201ENST00000277537 MYO15BQ96JP2 1530 aa14.19□□□□□ -0.14
SEC16A-201ENST00000277537 MROH2BQ7Z745 1585 aa14.09□□□□□ -0.15
SEC16A-201ENST00000277537 APLP2Q06481 763 aa14.01□□□□□ -0.17
SEC16A-201ENST00000277537 BAZ1AQ9NRL2 1556 aaPredicted RBP13.98□□□□□ -0.17
SEC16A-201ENST00000277537 TRIM26Q12899 539 aaPredicted RBP13.98□□□□□ -0.17
SEC16A-201ENST00000277537 WIZO95785 1651 aa13.94□□□□□ -0.18
SEC16A-201ENST00000277537 CSRNP3Q8WYN3 585 aa13.85□□□□□ -0.19
SEC16A-201ENST00000277537 HRCP23327 699 aa13.85□□□□□ -0.19
SEC16A-201ENST00000277537 ATP1B4Q9UN42 357 aaPredicted RBP13.84□□□□□ -0.19
SEC16A-201ENST00000277537 CCDC88BA6NC98 1476 aa13.81□□□□□ -0.2
SEC16A-201ENST00000277537 BAZ1BQ9UIG0 1483 aaKnown RBP13.8□□□□□ -0.2
SEC16A-201ENST00000277537 CCER1Q8TC90 406 aaPredicted RBP13.8□□□□□ -0.2
SEC16A-201ENST00000277537 SMARCA4P51532 1647 aa13.75□□□□□ -0.21
SEC16A-201ENST00000277537 ABCC8Q09428 1581 aa13.72□□□□□ -0.21
SEC16A-201ENST00000277537 TOP2AP11388 1531 aaKnown RBP13.7□□□□□ -0.22
SEC16A-201ENST00000277537 WRNQ14191 1432 aaPredicted RBP eCLIP13.69□□□□□ -0.22
SEC16A-201ENST00000277537 HNRNPUL2Q1KMD3 747 aaKnown RBP13.68□□□□□ -0.22
SEC16A-201ENST00000277537 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.67□□□□□ -0.22
SEC16A-201ENST00000277537 SOGA1O94964 1423 aa13.65□□□□□ -0.22
SEC16A-201ENST00000277537 ATAD2BQ9ULI0 1458 aa13.65□□□□□ -0.22
SEC16A-201ENST00000277537 ZEB1P37275 1124 aaPredicted RBP13.65□□□□□ -0.22
SEC16A-201ENST00000277537 ITGAEP38570 1179 aa13.62□□□□□ -0.23
SEC16A-201ENST00000277537 SMARCA2P51531 1590 aa13.58□□□□□ -0.24
SEC16A-201ENST00000277537 BICRAQ9NZM4 1560 aa13.58□□□□□ -0.24
SEC16A-201ENST00000277537 P3H3Q8IVL6 736 aa13.56□□□□□ -0.24
SEC16A-201ENST00000277537 UNC13AQ9UPW8 1703 aa13.53□□□□□ -0.24
SEC16A-201ENST00000277537 CEP162Q5TB80 1403 aa13.51□□□□□ -0.25
SEC16A-201ENST00000277537 RUSC2Q8N2Y8 1516 aa13.5□□□□□ -0.25
SEC16A-201ENST00000277537 EEA1Q15075 1411 aa13.47□□□□□ -0.25
SEC16A-201ENST00000277537 GOLGA3Q08378 1498 aa13.45□□□□□ -0.26
SEC16A-201ENST00000277537 TNIKQ9UKE5 1360 aa13.44□□□□□ -0.26
SEC16A-201ENST00000277537 CLIP1P30622 1438 aa13.44□□□□□ -0.26
SEC16A-201ENST00000277537 EIF4G1Q04637 1599 aaKnown RBP13.43□□□□□ -0.26
SEC16A-201ENST00000277537 FBLN2P98095 1184 aa13.4□□□□□ -0.26
SEC16A-201ENST00000277537 CEP164Q9UPV0 1460 aa13.38□□□□□ -0.27
SEC16A-201ENST00000277537 KIF27Q86VH2 1401 aa13.37□□□□□ -0.27
SEC16A-201ENST00000277537 ARID3CA6NKF2 412 aa13.37□□□□□ -0.27
SEC16A-201ENST00000277537 FAM50AQ14320 339 aaKnown RBP13.37□□□□□ -0.27
SEC16A-201ENST00000277537 NCAPD3P42695 1498 aa13.36□□□□□ -0.27
SEC16A-201ENST00000277537 CADPSQ9ULU8 1353 aa13.35□□□□□ -0.27
SEC16A-201ENST00000277537 CUX2O14529 1486 aa13.32□□□□□ -0.28
SEC16A-201ENST00000277537 RAPGEF2Q9Y4G8 1499 aa13.28□□□□□ -0.28
SEC16A-201ENST00000277537 SYNJ1O43426 1573 aa13.26□□□□□ -0.29
SEC16A-201ENST00000277537 DNAJC5BQ9UF47 199 aa13.26□□□□□ -0.29
SEC16A-201ENST00000277537 CARMIL1Q5VZK9 1371 aa13.24□□□□□ -0.29
SEC16A-201ENST00000277537 TDRD9Q8NDG6 1382 aaKnown RBP13.21□□□□□ -0.29
SEC16A-201ENST00000277537 PEG3Q9GZU2 1588 aa13.21□□□□□ -0.29
SEC16A-201ENST00000277537 CC2D2AQ9P2K1 1620 aa13.2□□□□□ -0.3
SEC16A-201ENST00000277537 YTHDC1Q96MU7 727 aaKnown RBP13.2□□□□□ -0.3
SEC16A-201ENST00000277537 FANCD2Q9BXW9 1451 aa13.19□□□□□ -0.3
SEC16A-201ENST00000277537 CFTRP13569 1480 aa13.18□□□□□ -0.3
SEC16A-201ENST00000277537 HMGXB3Q12766 1538 aa13.17□□□□□ -0.3
SEC16A-201ENST00000277537 KANK4Q5T7N3 995 aaPredicted RBP13.17□□□□□ -0.3
SEC16A-201ENST00000277537 NESP48681 1621 aa13.17□□□□□ -0.3
SEC16A-201ENST00000277537 NEUROD1Q13562 356 aa13.16□□□□□ -0.3
SEC16A-201ENST00000277537 DIEXFQ68CQ4 756 aaKnown RBP13.16□□□□□ -0.3
SEC16A-201ENST00000277537 VPS8Q8N3P4 1428 aa13.15□□□□□ -0.3
SEC16A-201ENST00000277537 PDS5BQ9NTI5 1447 aa13.14□□□□□ -0.31
SEC16A-201ENST00000277537 FGD5Q6ZNL6 1462 aa13.12□□□□□ -0.31
SEC16A-201ENST00000277537 RAD54L2Q9Y4B4 1467 aa13.11□□□□□ -0.31
SEC16A-201ENST00000277537 CHMP7Q8WUX9 453 aaPredicted RBP13.11□□□□□ -0.31
SEC16A-201ENST00000277537 CUX1P39880 1505 aa13.1□□□□□ -0.31
SEC16A-201ENST00000277537 IGF1RP08069 1367 aa13.1□□□□□ -0.31
SEC16A-201ENST00000277537 ERCC6Q03468 1493 aa13.09□□□□□ -0.31
SEC16A-201ENST00000277537 TRIM52Q96A61 297 aa13.08□□□□□ -0.32
SEC16A-201ENST00000277537 TOP2BQ02880 1626 aa13.06□□□□□ -0.32
SEC16A-201ENST00000277537 MTUS2Q5JR59 1369 aa13.05□□□□□ -0.32
SEC16A-201ENST00000277537 CENPBP07199 599 aaPredicted RBP13.04□□□□□ -0.32
SEC16A-201ENST00000277537 CHIC2Q9UKJ5 165 aa13.04□□□□□ -0.32
SEC16A-201ENST00000277537 ZNF777Q9ULD5 760 aaPredicted RBP13.04□□□□□ -0.32
SEC16A-201ENST00000277537 ZNF316A6NFI3 1004 aaPredicted RBP13.03□□□□□ -0.32
SEC16A-201ENST00000277537 FHOD3Q2V2M9 1422 aa12.99□□□□□ -0.33
SEC16A-201ENST00000277537 KIF21BO75037 1637 aa12.98□□□□□ -0.33
SEC16A-201ENST00000277537 PRXQ9BXM0 1461 aa12.97□□□□□ -0.33
SEC16A-201ENST00000277537 MYT1LQ9UL68 1186 aa12.97□□□□□ -0.33
SEC16A-201ENST00000277537 PELP1Q8IZL8 1130 aaKnown RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms