RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 NISCHQ9Y2I1 1504 aa38.51■■■■□ 3.76
LIME1-209ENST00000494776 CCDC180Q9P1Z9 1646 aa34.21■■■■□ 3.07
LIME1-209ENST00000494776 ABCC9O60706 1549 aa33.59■■■□□ 2.97
LIME1-209ENST00000494776 DCAF8L2P0C7V8 631 aa32.38■■■□□ 2.77
LIME1-209ENST00000494776 RB1CC1Q8TDY2 1594 aa32.27■■■□□ 2.76
LIME1-209ENST00000494776 NACADO15069 1562 aa32.21■■■□□ 2.75
LIME1-209ENST00000494776 ZCCHC6Q5VYS8 1495 aaKnown RBP32.05■■■□□ 2.72
LIME1-209ENST00000494776 MYO15BQ96JP2 1530 aa31.95■■■□□ 2.71
LIME1-209ENST00000494776 DCAF1Q9Y4B6 1507 aa31.82■■■□□ 2.68
LIME1-209ENST00000494776 UNC13AQ9UPW8 1703 aa31.45■■■□□ 2.63
LIME1-209ENST00000494776 PABPN1Q86U42 306 aaKnown RBP eCLIP31.43■■■□□ 2.622e-9■■■■□ 23.4
LIME1-209ENST00000494776 SCRIBQ14160 1630 aa31.28■■■□□ 2.6
LIME1-209ENST00000494776 BICRAQ9NZM4 1560 aa31.22■■■□□ 2.59
LIME1-209ENST00000494776 DNAJC5BQ9UF47 199 aa30.99■■■□□ 2.55
LIME1-209ENST00000494776 SHROOM4Q9ULL8 1493 aa30.91■■■□□ 2.54
LIME1-209ENST00000494776 EIF4G1Q04637 1599 aaKnown RBP30.45■■■□□ 2.46
LIME1-209ENST00000494776 CC2D2AQ9P2K1 1620 aa30.34■■■□□ 2.45
LIME1-209ENST00000494776 CECR2Q9BXF3 1484 aa30.18■■■□□ 2.42
LIME1-209ENST00000494776 SMARCA4P51532 1647 aa29.88■■■□□ 2.37
LIME1-209ENST00000494776 BAZ1AQ9NRL2 1556 aaPredicted RBP29.86■■■□□ 2.37
LIME1-209ENST00000494776 ATAD2BQ9ULI0 1458 aa29.74■■■□□ 2.35
LIME1-209ENST00000494776 NCAPD3P42695 1498 aa29.72■■■□□ 2.35
LIME1-209ENST00000494776 SMARCA2P51531 1590 aa29.72■■■□□ 2.35
LIME1-209ENST00000494776 MROH2BQ7Z745 1585 aa29.69■■■□□ 2.34
LIME1-209ENST00000494776 HMGXB3Q12766 1538 aa29.55■■■□□ 2.32
LIME1-209ENST00000494776 PEG3Q9GZU2 1588 aa29.55■■■□□ 2.32
LIME1-209ENST00000494776 BAZ1BQ9UIG0 1483 aaKnown RBP29.53■■■□□ 2.32
LIME1-209ENST00000494776 WIZO95785 1651 aa29.36■■■□□ 2.29
LIME1-209ENST00000494776 RSF1Q96T23 1441 aaPredicted RBP29.35■■■□□ 2.29
LIME1-209ENST00000494776 TOP2AP11388 1531 aaKnown RBP29.05■■■□□ 2.24
LIME1-209ENST00000494776 NESP48681 1621 aa29.03■■■□□ 2.24
LIME1-209ENST00000494776 ERCC6Q03468 1493 aa29■■■□□ 2.23
LIME1-209ENST00000494776 LAMC3Q9Y6N6 1575 aa28.94■■■□□ 2.22
LIME1-209ENST00000494776 CADPSQ9ULU8 1353 aa28.88■■■□□ 2.21
LIME1-209ENST00000494776 PDS5BQ9NTI5 1447 aa28.8■■■□□ 2.2
LIME1-209ENST00000494776 CCDC88BA6NC98 1476 aa28.73■■■□□ 2.19
LIME1-209ENST00000494776 SUPT5HO00267 1087 aaKnown RBP28.73■■■□□ 2.19
LIME1-209ENST00000494776 CUX2O14529 1486 aa28.72■■■□□ 2.19
LIME1-209ENST00000494776 CFTRP13569 1480 aa28.68■■■□□ 2.18
LIME1-209ENST00000494776 KIF21AQ7Z4S6 1674 aa28.66■■■□□ 2.18
LIME1-209ENST00000494776 FANCD2Q9BXW9 1451 aa28.56■■■□□ 2.16
LIME1-209ENST00000494776 THOC2Q8NI27 1593 aaKnown RBP28.54■■■□□ 2.16
LIME1-209ENST00000494776 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
LIME1-209ENST00000494776 MRC2Q9UBG0 1479 aa28.48■■■□□ 2.15
LIME1-209ENST00000494776 PRDM2Q13029 1718 aa28.41■■■□□ 2.14
LIME1-209ENST00000494776 DNAJC5Q9H3Z4 198 aa28.4■■■□□ 2.14
LIME1-209ENST00000494776 WDR62O43379 1518 aa28.34■■■□□ 2.13
LIME1-209ENST00000494776 URB2Q14146 1524 aaKnown RBP28.24■■■□□ 2.11
LIME1-209ENST00000494776 ABCC8Q09428 1581 aa28.1■■■□□ 2.09
LIME1-209ENST00000494776 TOPBP1Q92547 1522 aa28.08■■■□□ 2.09
LIME1-209ENST00000494776 DNMBPQ6XZF7 1577 aa28.03■■■□□ 2.08
LIME1-209ENST00000494776 IFT140Q96RY7 1462 aa27.93■■■□□ 2.06
LIME1-209ENST00000494776 CUX1P39880 1505 aa27.85■■■□□ 2.05
LIME1-209ENST00000494776 POLA1P09884 1462 aaPredicted RBP27.83■■■□□ 2.05
LIME1-209ENST00000494776 ZNF608Q9ULD9 1512 aaPredicted RBP27.78■■■□□ 2.04
LIME1-209ENST00000494776 FGD5Q6ZNL6 1462 aa27.78■■■□□ 2.04
LIME1-209ENST00000494776 SOGA1O94964 1423 aa27.77■■■□□ 2.04
LIME1-209ENST00000494776 RAD54L2Q9Y4B4 1467 aa27.74■■■□□ 2.03
LIME1-209ENST00000494776 TARBP1Q13395 1621 aaKnown RBP27.74■■■□□ 2.03
LIME1-209ENST00000494776 WRNQ14191 1432 aaPredicted RBP eCLIP27.7■■■□□ 2.03
LIME1-209ENST00000494776 EIF4G3O43432 1585 aaKnown RBP27.66■■■□□ 2.02
LIME1-209ENST00000494776 AQRO60306 1485 aaKnown RBP eCLIP27.66■■■□□ 2.02
LIME1-209ENST00000494776 TDRD9Q8NDG6 1382 aaKnown RBP27.62■■■□□ 2.01
LIME1-209ENST00000494776 TOP2BQ02880 1626 aa27.59■■■□□ 2.01
LIME1-209ENST00000494776 SYNJ1O43426 1573 aa27.58■■■□□ 2.01
LIME1-209ENST00000494776 BIVM-ERCC5R4GMW8 1640 aa27.57■■■□□ 2
LIME1-209ENST00000494776 OSCARQ8IYS5 282 aa27.52■■■□□ 2
LIME1-209ENST00000494776 WDR97A6NE52 1622 aa27.52■■■□□ 2
LIME1-209ENST00000494776 ABCA10Q8WWZ4 1543 aa27.49■■□□□ 1.99
LIME1-209ENST00000494776 FBLN2P98095 1184 aa27.44■■□□□ 1.98
LIME1-209ENST00000494776 GAPVD1Q14C86 1478 aa27.44■■□□□ 1.98
LIME1-209ENST00000494776 GRIN2BQ13224 1484 aa27.43■■□□□ 1.98
LIME1-209ENST00000494776 SNAPC4Q5SXM2 1469 aa27.39■■□□□ 1.98
LIME1-209ENST00000494776 ABCA5Q8WWZ7 1642 aa27.35■■□□□ 1.97
LIME1-209ENST00000494776 MAGI1Q96QZ7 1491 aaPredicted RBP27.34■■□□□ 1.97
LIME1-209ENST00000494776 CHMP7Q8WUX9 453 aaPredicted RBP27.33■■□□□ 1.97
LIME1-209ENST00000494776 PBRM1Q86U86 1689 aa27.33■■□□□ 1.97
LIME1-209ENST00000494776 CHD1O14646 1710 aa27.31■■□□□ 1.96
LIME1-209ENST00000494776 TRIM41Q8WV44 630 aa27.3■■□□□ 1.96
LIME1-209ENST00000494776 SYNJ2O15056 1496 aa27.25■■□□□ 1.95
LIME1-209ENST00000494776 ERICH3Q5RHP9 1530 aa27.16■■□□□ 1.94
LIME1-209ENST00000494776 KIF27Q86VH2 1401 aa27.15■■□□□ 1.94
LIME1-209ENST00000494776 ADAMTS12P58397 1594 aa27.11■■□□□ 1.93
LIME1-209ENST00000494776 FHAD1B1AJZ9 1412 aa27.11■■□□□ 1.93
LIME1-209ENST00000494776 GRIN2AQ12879 1464 aa27.06■■□□□ 1.92
LIME1-209ENST00000494776 IGF1RP08069 1367 aa27.01■■□□□ 1.91
LIME1-209ENST00000494776 ARHGEF11O15085 1522 aa27■■□□□ 1.91
LIME1-209ENST00000494776 CLASP1Q7Z460 1538 aa27■■□□□ 1.91
LIME1-209ENST00000494776 RIMBP3CA6NJZ7 1639 aa26.99■■□□□ 1.91
LIME1-209ENST00000494776 RIMBP3BA6NNM3 1639 aa26.99■■□□□ 1.91
LIME1-209ENST00000494776 RIMBP3Q9UFD9 1639 aa26.99■■□□□ 1.91
LIME1-209ENST00000494776 NUP160Q12769 1436 aa26.91■■□□□ 1.9
LIME1-209ENST00000494776 CUL7Q14999 1698 aa26.91■■□□□ 1.9
LIME1-209ENST00000494776 CEP170Q5SW79 1584 aa26.9■■□□□ 1.9
LIME1-209ENST00000494776 CARMIL1Q5VZK9 1371 aa26.88■■□□□ 1.89
LIME1-209ENST00000494776 RUSC2Q8N2Y8 1516 aa26.85■■□□□ 1.89
LIME1-209ENST00000494776 CYB5RLQ6IPT4 315 aa26.84■■□□□ 1.89
LIME1-209ENST00000494776 ARAP1Q96P48 1450 aa26.77■■□□□ 1.88
LIME1-209ENST00000494776 JPH4Q96JJ6 628 aa26.73■■□□□ 1.87
LIME1-209ENST00000494776 CHIC1Q5VXU3 224 aa26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms