RNA–Protein interactions for RNA: ENST00000411900.5

PKP4-203, Transcript of plakophilin 4, humanhuman

TSL 4

Gene PKP4, Length 552 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-203ENST00000411900 NISCHQ9Y2I1 1504 aa24.87■■□□□ 1.57
PKP4-203ENST00000411900 CCDC180Q9P1Z9 1646 aa22.24■■□□□ 1.15
PKP4-203ENST00000411900 ABCC9O60706 1549 aa22.11■■□□□ 1.13
PKP4-203ENST00000411900 RB1CC1Q8TDY2 1594 aa21.08■□□□□ 0.97
PKP4-203ENST00000411900 DCAF8L2P0C7V8 631 aa21.01■□□□□ 0.95
PKP4-203ENST00000411900 NACADO15069 1562 aa20.96■□□□□ 0.95
PKP4-203ENST00000411900 UNC13AQ9UPW8 1703 aa20.7■□□□□ 0.9
PKP4-203ENST00000411900 MYO15BQ96JP2 1530 aa20.67■□□□□ 0.9
PKP4-203ENST00000411900 ZCCHC6Q5VYS8 1495 aaKnown RBP20.66■□□□□ 0.9
PKP4-203ENST00000411900 PABPN1Q86U42 306 aaKnown RBP eCLIP20.63■□□□□ 0.89
PKP4-203ENST00000411900 DNAJC5BQ9UF47 199 aa20.55■□□□□ 0.88
PKP4-203ENST00000411900 DCAF1Q9Y4B6 1507 aa20.5■□□□□ 0.87
PKP4-203ENST00000411900 BICRAQ9NZM4 1560 aa20.48■□□□□ 0.87
PKP4-203ENST00000411900 SCRIBQ14160 1630 aa20.36■□□□□ 0.85
PKP4-203ENST00000411900 SHROOM4Q9ULL8 1493 aa20.11■□□□□ 0.81
PKP4-203ENST00000411900 CC2D2AQ9P2K1 1620 aa19.98■□□□□ 0.79
PKP4-203ENST00000411900 EIF4G1Q04637 1599 aaKnown RBP19.95■□□□□ 0.78
PKP4-203ENST00000411900 CECR2Q9BXF3 1484 aa19.86■□□□□ 0.77
PKP4-203ENST00000411900 SMARCA4P51532 1647 aa19.4■□□□□ 0.7
PKP4-203ENST00000411900 ATAD2BQ9ULI0 1458 aa19.34■□□□□ 0.69
PKP4-203ENST00000411900 NCAPD3P42695 1498 aa19.33■□□□□ 0.68
PKP4-203ENST00000411900 BAZ1AQ9NRL2 1556 aaPredicted RBP19.29■□□□□ 0.68
PKP4-203ENST00000411900 SMARCA2P51531 1590 aa19.28■□□□□ 0.68
PKP4-203ENST00000411900 HMGXB3Q12766 1538 aa19.22■□□□□ 0.67
PKP4-203ENST00000411900 MROH2BQ7Z745 1585 aa19.21■□□□□ 0.67
PKP4-203ENST00000411900 BAZ1BQ9UIG0 1483 aaKnown RBP19.17■□□□□ 0.66
PKP4-203ENST00000411900 PEG3Q9GZU2 1588 aa19.15■□□□□ 0.66
PKP4-203ENST00000411900 ERCC6Q03468 1493 aa19.06■□□□□ 0.64
PKP4-203ENST00000411900 NESP48681 1621 aa19.06■□□□□ 0.64
PKP4-203ENST00000411900 WIZO95785 1651 aa19.03■□□□□ 0.64
PKP4-203ENST00000411900 CUX2O14529 1486 aa18.9■□□□□ 0.62
PKP4-203ENST00000411900 LAMC3Q9Y6N6 1575 aa18.89■□□□□ 0.62
PKP4-203ENST00000411900 KIF21AQ7Z4S6 1674 aa18.85■□□□□ 0.61
PKP4-203ENST00000411900 RSF1Q96T23 1441 aaPredicted RBP18.84■□□□□ 0.61
PKP4-203ENST00000411900 THOC2Q8NI27 1593 aaKnown RBP18.81■□□□□ 0.6
PKP4-203ENST00000411900 CADPSQ9ULU8 1353 aa18.77■□□□□ 0.6
PKP4-203ENST00000411900 PDS5BQ9NTI5 1447 aa18.76■□□□□ 0.59
PKP4-203ENST00000411900 TOP2AP11388 1531 aaKnown RBP18.74■□□□□ 0.59
PKP4-203ENST00000411900 DNAJC5Q9H3Z4 198 aa18.67■□□□□ 0.58
PKP4-203ENST00000411900 MRC2Q9UBG0 1479 aa18.61■□□□□ 0.57
PKP4-203ENST00000411900 CFTRP13569 1480 aa18.59■□□□□ 0.57
PKP4-203ENST00000411900 FANCD2Q9BXW9 1451 aa18.59■□□□□ 0.57
PKP4-203ENST00000411900 CEP164Q9UPV0 1460 aa18.59■□□□□ 0.57
PKP4-203ENST00000411900 WDR62O43379 1518 aa18.56■□□□□ 0.56
PKP4-203ENST00000411900 CCDC88BA6NC98 1476 aa18.53■□□□□ 0.56
PKP4-203ENST00000411900 PRDM2Q13029 1718 aa18.51■□□□□ 0.55
PKP4-203ENST00000411900 URB2Q14146 1524 aaKnown RBP18.44■□□□□ 0.54
PKP4-203ENST00000411900 TOPBP1Q92547 1522 aa18.26■□□□□ 0.51
PKP4-203ENST00000411900 SUPT5HO00267 1087 aaKnown RBP18.24■□□□□ 0.51
PKP4-203ENST00000411900 DNMBPQ6XZF7 1577 aa18.21■□□□□ 0.51
PKP4-203ENST00000411900 ZNF608Q9ULD9 1512 aaPredicted RBP18.19■□□□□ 0.5
PKP4-203ENST00000411900 IFT140Q96RY7 1462 aa18.19■□□□□ 0.5
PKP4-203ENST00000411900 ABCC8Q09428 1581 aa18.17■□□□□ 0.5
PKP4-203ENST00000411900 EIF4G3O43432 1585 aaKnown RBP18.11■□□□□ 0.49
PKP4-203ENST00000411900 TARBP1Q13395 1621 aaKnown RBP18.09■□□□□ 0.49
PKP4-203ENST00000411900 POLA1P09884 1462 aaPredicted RBP18.08■□□□□ 0.49
PKP4-203ENST00000411900 OSCARQ8IYS5 282 aa18.08■□□□□ 0.48
PKP4-203ENST00000411900 AQRO60306 1485 aaKnown RBP eCLIP18.05■□□□□ 0.481e-6■■□□□ 11.4
PKP4-203ENST00000411900 RAD54L2Q9Y4B4 1467 aa18.05■□□□□ 0.48
PKP4-203ENST00000411900 TRIM41Q8WV44 630 aa18.04■□□□□ 0.48
PKP4-203ENST00000411900 CUX1P39880 1505 aa18.03■□□□□ 0.48
PKP4-203ENST00000411900 FGD5Q6ZNL6 1462 aa18.01■□□□□ 0.47
PKP4-203ENST00000411900 SOGA1O94964 1423 aa18■□□□□ 0.47
PKP4-203ENST00000411900 CHD1O14646 1710 aa17.98■□□□□ 0.47
PKP4-203ENST00000411900 TDRD9Q8NDG6 1382 aaKnown RBP17.96■□□□□ 0.47
PKP4-203ENST00000411900 FBLN2P98095 1184 aa17.92■□□□□ 0.46
PKP4-203ENST00000411900 WDR97A6NE52 1622 aa17.9■□□□□ 0.46
PKP4-203ENST00000411900 RIMBP3CA6NJZ7 1639 aa17.9■□□□□ 0.46
PKP4-203ENST00000411900 RIMBP3BA6NNM3 1639 aa17.9■□□□□ 0.46
PKP4-203ENST00000411900 RIMBP3Q9UFD9 1639 aa17.9■□□□□ 0.46
PKP4-203ENST00000411900 SNAPC4Q5SXM2 1469 aa17.88■□□□□ 0.45
PKP4-203ENST00000411900 PBRM1Q86U86 1689 aa17.83■□□□□ 0.45
PKP4-203ENST00000411900 ARHGEF11O15085 1522 aa17.82■□□□□ 0.44
PKP4-203ENST00000411900 SYNJ1O43426 1573 aa17.81■□□□□ 0.44
PKP4-203ENST00000411900 GRIN2BQ13224 1484 aa17.81■□□□□ 0.44
PKP4-203ENST00000411900 BIVM-ERCC5R4GMW8 1640 aa17.8■□□□□ 0.44
PKP4-203ENST00000411900 GAPVD1Q14C86 1478 aa17.79■□□□□ 0.44
PKP4-203ENST00000411900 ABCA10Q8WWZ4 1543 aa17.78■□□□□ 0.44
PKP4-203ENST00000411900 MAGI1Q96QZ7 1491 aaPredicted RBP17.78■□□□□ 0.44
PKP4-203ENST00000411900 TOP2BQ02880 1626 aa17.78■□□□□ 0.44
PKP4-203ENST00000411900 ABCA5Q8WWZ7 1642 aa17.78■□□□□ 0.44
PKP4-203ENST00000411900 WRNQ14191 1432 aaPredicted RBP eCLIP17.78■□□□□ 0.44
PKP4-203ENST00000411900 CHMP7Q8WUX9 453 aaPredicted RBP17.77■□□□□ 0.44
PKP4-203ENST00000411900 SYNJ2O15056 1496 aa17.73■□□□□ 0.43
PKP4-203ENST00000411900 CYB5RLQ6IPT4 315 aa17.7■□□□□ 0.42
PKP4-203ENST00000411900 CLASP1Q7Z460 1538 aa17.7■□□□□ 0.42
PKP4-203ENST00000411900 ARAP1Q96P48 1450 aa17.67■□□□□ 0.42
PKP4-203ENST00000411900 ADAMTS12P58397 1594 aa17.63■□□□□ 0.41
PKP4-203ENST00000411900 GRIN2AQ12879 1464 aa17.59■□□□□ 0.41
PKP4-203ENST00000411900 ERICH3Q5RHP9 1530 aa17.57■□□□□ 0.4
PKP4-203ENST00000411900 CEP170Q5SW79 1584 aa17.56■□□□□ 0.4
PKP4-203ENST00000411900 FHAD1B1AJZ9 1412 aa17.55■□□□□ 0.4
PKP4-203ENST00000411900 ERCC6L2Q5T890 1561 aa17.5■□□□□ 0.39
PKP4-203ENST00000411900 NUP160Q12769 1436 aa17.5■□□□□ 0.39
PKP4-203ENST00000411900 TRHP20396 242 aaPredicted RBP17.46■□□□□ 0.39
PKP4-203ENST00000411900 SHROOM2Q13796 1616 aa17.43■□□□□ 0.38
PKP4-203ENST00000411900 KIF27Q86VH2 1401 aa17.42■□□□□ 0.38
PKP4-203ENST00000411900 IGF1RP08069 1367 aa17.39■□□□□ 0.37
PKP4-203ENST00000411900 RUSC2Q8N2Y8 1516 aa17.38■□□□□ 0.37
PKP4-203ENST00000411900 CUL7Q14999 1698 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms