Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC31.16■■■□□ 2.58not detected
CDC40O60508 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5not detected
CDC40O60508 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC30.43■■■□□ 2.46not detected
CDC40O60508 AL356512.1-201ENST00000607453 1739 ntBASIC30.3■■■□□ 2.44not detected
CDC40O60508 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.442e-7■■□□□ 14
CDC40O60508 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43not detected
CDC40O60508 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42not detected
CDC40O60508 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC29.95■■■□□ 2.39not detected
CDC40O60508 HES6-203ENST00000409160 1600 ntTSL 2 BASIC29.93■■■□□ 2.38not detected
CDC40O60508 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC29.63■■■□□ 2.33not detected
CDC40O60508 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC29.59■■■□□ 2.339e-7■■■■□ 20.9
CDC40O60508 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC29.48■■■□□ 2.31not detected
CDC40O60508 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.295e-7■■■■□ 25.7
CDC40O60508 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC29.34■■■□□ 2.299e-7■■■■□ 20.9
CDC40O60508 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC29.27■■■□□ 2.28not detected
CDC40O60508 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC29.15■■■□□ 2.26not detected
CDC40O60508 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC29.14■■■□□ 2.25not detected
CDC40O60508 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC29.11■■■□□ 2.25not detected
CDC40O60508 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC29.06■■■□□ 2.24not detected
CDC40O60508 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23not detected
CDC40O60508 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC28.88■■■□□ 2.21not detected
CDC40O60508 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC28.79■■■□□ 2.2not detected
CDC40O60508 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC28.76■■■□□ 2.19not detected
CDC40O60508 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC28.72■■■□□ 2.19not detected
CDC40O60508 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC28.53■■■□□ 2.16not detected
CDC40O60508 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16not detected
CDC40O60508 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15not detected
CDC40O60508 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC28.4■■■□□ 2.14not detected
CDC40O60508 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13not detected
CDC40O60508 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC28.37■■■□□ 2.13not detected
CDC40O60508 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.34■■■□□ 2.13not detected
CDC40O60508 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12not detected
CDC40O60508 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC28.29■■■□□ 2.12not detected
CDC40O60508 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11not detected
CDC40O60508 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11not detected
CDC40O60508 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1not detected
CDC40O60508 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC28.17■■■□□ 2.1not detected
CDC40O60508 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1not detected
CDC40O60508 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09not detected
CDC40O60508 INO80B-203ENST00000409917 796 ntTSL 2 BASIC28.1■■■□□ 2.09not detected
CDC40O60508 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08not detected
CDC40O60508 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC27.92■■■□□ 2.06not detected
CDC40O60508 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC27.87■■■□□ 2.05not detected
CDC40O60508 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.042e-9■□□□□ 9
CDC40O60508 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC27.81■■■□□ 2.042e-7■■□□□ 14
CDC40O60508 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04not detected
CDC40O60508 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04not detected
CDC40O60508 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03not detected
CDC40O60508 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03not detected
CDC40O60508 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC27.7■■■□□ 2.03not detected
CDC40O60508 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC27.69■■■□□ 2.02not detected
CDC40O60508 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC27.68■■■□□ 2.02not detected
CDC40O60508 AC015813.7-201ENST00000623294 581 ntBASIC27.67■■■□□ 2.02not detected
CDC40O60508 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC27.66■■■□□ 2.02not detected
CDC40O60508 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01not detected
CDC40O60508 AC006077.2-201ENST00000623591 457 ntBASIC27.58■■■□□ 2.01not detected
CDC40O60508 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC27.57■■■□□ 2not detected
CDC40O60508 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2not detected
CDC40O60508 ZNRF2P1-201ENST00000441407 443 ntBASIC27.54■■■□□ 2not detected
CDC40O60508 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC27.52■■■□□ 2not detected
CDC40O60508 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99not detected
CDC40O60508 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC27.4■■□□□ 1.98not detected
CDC40O60508 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC27.36■■□□□ 1.97not detected
CDC40O60508 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC27.34■■□□□ 1.97not detected
CDC40O60508 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC27.31■■□□□ 1.96not detected
CDC40O60508 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC27.31■■□□□ 1.96not detected
CDC40O60508 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96not detected
CDC40O60508 ILK-212ENST00000532063 1617 ntTSL 2 BASIC27.17■■□□□ 1.94not detected
CDC40O60508 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC27.14■■□□□ 1.94not detected
CDC40O60508 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC27.13■■□□□ 1.93not detected
CDC40O60508 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.922e-6■□□□□ 11
CDC40O60508 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.928e-7■■□□□ 14.2
CDC40O60508 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC27.03■■□□□ 1.92not detected
CDC40O60508 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92not detected
CDC40O60508 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91not detected
CDC40O60508 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91not detected
CDC40O60508 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC26.97■■□□□ 1.91not detected
CDC40O60508 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC26.91■■□□□ 1.9not detected
CDC40O60508 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC26.91■■□□□ 1.9not detected
CDC40O60508 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9not detected
CDC40O60508 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9not detected
CDC40O60508 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC26.9■■□□□ 1.9not detected
CDC40O60508 AP002365.1-201ENST00000603448 772 ntBASIC26.9■■□□□ 1.9not detected
CDC40O60508 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC26.86■■□□□ 1.89not detected
CDC40O60508 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89not detected
CDC40O60508 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC26.84■■□□□ 1.89not detected
CDC40O60508 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC26.84■■□□□ 1.89not detected
CDC40O60508 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88not detected
CDC40O60508 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88not detected
CDC40O60508 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88not detected
CDC40O60508 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88not detected
CDC40O60508 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88not detected
CDC40O60508 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.72■■□□□ 1.87not detected
CDC40O60508 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.72■■□□□ 1.87not detected
CDC40O60508 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.72■■□□□ 1.87not detected
CDC40O60508 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.72■■□□□ 1.87not detected
CDC40O60508 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.71■■□□□ 1.875e-6■■□□□ 13
CDC40O60508 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.68■■□□□ 1.86not detected
CDC40O60508 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.65■■□□□ 1.866e-7■■□□□ 11.9
CDC40O60508 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86not detected
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms