Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHGA4Q9Y5G9 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHGA4Q9Y5G9 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.04■■□□□ 1.76
PCDHGA4Q9Y5G9 MIR762-201ENST00000390236 83 ntBASIC26.03■■□□□ 1.76
PCDHGA4Q9Y5G9 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHGA4Q9Y5G9 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHGA4Q9Y5G9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHGA4Q9Y5G9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHGA4Q9Y5G9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC26.02■■□□□ 1.76
PCDHGA4Q9Y5G9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHGA4Q9Y5G9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHGA4Q9Y5G9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHGA4Q9Y5G9 WASH5P-204ENST00000632292 975 ntBASIC26■■□□□ 1.75
PCDHGA4Q9Y5G9 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PCDHGA4Q9Y5G9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
PCDHGA4Q9Y5G9 AC005559.1-201ENST00000589661 871 ntBASIC25.99■■□□□ 1.75
PCDHGA4Q9Y5G9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PCDHGA4Q9Y5G9 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.97■■□□□ 1.75
PCDHGA4Q9Y5G9 HLA-V-202ENST00000446817 847 ntBASIC25.96■■□□□ 1.75
PCDHGA4Q9Y5G9 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDHGA4Q9Y5G9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.95■■□□□ 1.74
PCDHGA4Q9Y5G9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.95■■□□□ 1.74
PCDHGA4Q9Y5G9 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHGA4Q9Y5G9 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
PCDHGA4Q9Y5G9 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
PCDHGA4Q9Y5G9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
PCDHGA4Q9Y5G9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.93■■□□□ 1.74
PCDHGA4Q9Y5G9 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.93■■□□□ 1.74
PCDHGA4Q9Y5G9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.93■■□□□ 1.74
PCDHGA4Q9Y5G9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.93■■□□□ 1.74
PCDHGA4Q9Y5G9 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.91■■□□□ 1.74
PCDHGA4Q9Y5G9 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
PCDHGA4Q9Y5G9 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.91■■□□□ 1.74
PCDHGA4Q9Y5G9 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
PCDHGA4Q9Y5G9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.9■■□□□ 1.74
PCDHGA4Q9Y5G9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHGA4Q9Y5G9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHGA4Q9Y5G9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHGA4Q9Y5G9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
PCDHGA4Q9Y5G9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHGA4Q9Y5G9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHGA4Q9Y5G9 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
PCDHGA4Q9Y5G9 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHGA4Q9Y5G9 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
PCDHGA4Q9Y5G9 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHGA4Q9Y5G9 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.84■■□□□ 1.73
PCDHGA4Q9Y5G9 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.84■■□□□ 1.73
PCDHGA4Q9Y5G9 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHGA4Q9Y5G9 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHGA4Q9Y5G9 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.83■■□□□ 1.73
PCDHGA4Q9Y5G9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.82■■□□□ 1.72
PCDHGA4Q9Y5G9 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC25.81■■□□□ 1.72
PCDHGA4Q9Y5G9 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHGA4Q9Y5G9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHGA4Q9Y5G9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.8■■□□□ 1.72
PCDHGA4Q9Y5G9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.8■■□□□ 1.72
PCDHGA4Q9Y5G9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
PCDHGA4Q9Y5G9 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHGA4Q9Y5G9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHGA4Q9Y5G9 ZNRF2P2-203ENST00000454624 420 ntBASIC25.79■■□□□ 1.72
PCDHGA4Q9Y5G9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
PCDHGA4Q9Y5G9 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHGA4Q9Y5G9 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHGA4Q9Y5G9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHGA4Q9Y5G9 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC25.76■■□□□ 1.71
PCDHGA4Q9Y5G9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PCDHGA4Q9Y5G9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.74■■□□□ 1.71
PCDHGA4Q9Y5G9 AC135731.1-201ENST00000569415 2548 ntBASIC25.73■■□□□ 1.71
PCDHGA4Q9Y5G9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.73■■□□□ 1.71
PCDHGA4Q9Y5G9 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PCDHGA4Q9Y5G9 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
PCDHGA4Q9Y5G9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHGA4Q9Y5G9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHGA4Q9Y5G9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHGA4Q9Y5G9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.71■■□□□ 1.71
PCDHGA4Q9Y5G9 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHGA4Q9Y5G9 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.7■■□□□ 1.7
PCDHGA4Q9Y5G9 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHGA4Q9Y5G9 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHGA4Q9Y5G9 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHGA4Q9Y5G9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.68■■□□□ 1.7
PCDHGA4Q9Y5G9 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.67■■□□□ 1.7
PCDHGA4Q9Y5G9 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.66■■□□□ 1.7
PCDHGA4Q9Y5G9 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHGA4Q9Y5G9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.66■■□□□ 1.7
PCDHGA4Q9Y5G9 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.65■■□□□ 1.7
PCDHGA4Q9Y5G9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHGA4Q9Y5G9 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHGA4Q9Y5G9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHGA4Q9Y5G9 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHGA4Q9Y5G9 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHGA4Q9Y5G9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHGA4Q9Y5G9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHGA4Q9Y5G9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.64■■□□□ 1.7
PCDHGA4Q9Y5G9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.64■■□□□ 1.7
PCDHGA4Q9Y5G9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.69
PCDHGA4Q9Y5G9 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
PCDHGA4Q9Y5G9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
PCDHGA4Q9Y5G9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHGA4Q9Y5G9 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms