Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COMMD3-BMI1R4GMX3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COMMD3-BMI1R4GMX3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
COMMD3-BMI1R4GMX3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COMMD3-BMI1R4GMX3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
COMMD3-BMI1R4GMX3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.34■■□□□ 1.65
COMMD3-BMI1R4GMX3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COMMD3-BMI1R4GMX3 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC25.34■■□□□ 1.65
COMMD3-BMI1R4GMX3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COMMD3-BMI1R4GMX3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COMMD3-BMI1R4GMX3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COMMD3-BMI1R4GMX3 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COMMD3-BMI1R4GMX3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COMMD3-BMI1R4GMX3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
COMMD3-BMI1R4GMX3 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
COMMD3-BMI1R4GMX3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.27■■□□□ 1.64
COMMD3-BMI1R4GMX3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
COMMD3-BMI1R4GMX3 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
COMMD3-BMI1R4GMX3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.26■■□□□ 1.63
COMMD3-BMI1R4GMX3 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
COMMD3-BMI1R4GMX3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.25■■□□□ 1.63
COMMD3-BMI1R4GMX3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
COMMD3-BMI1R4GMX3 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.25■■□□□ 1.63
COMMD3-BMI1R4GMX3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
COMMD3-BMI1R4GMX3 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC25.23■■□□□ 1.63
COMMD3-BMI1R4GMX3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
COMMD3-BMI1R4GMX3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC25.21■■□□□ 1.63
COMMD3-BMI1R4GMX3 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
COMMD3-BMI1R4GMX3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.2■■□□□ 1.62
COMMD3-BMI1R4GMX3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
COMMD3-BMI1R4GMX3 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COMMD3-BMI1R4GMX3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
COMMD3-BMI1R4GMX3 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
COMMD3-BMI1R4GMX3 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COMMD3-BMI1R4GMX3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC25.17■■□□□ 1.62
COMMD3-BMI1R4GMX3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
COMMD3-BMI1R4GMX3 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COMMD3-BMI1R4GMX3 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
COMMD3-BMI1R4GMX3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
COMMD3-BMI1R4GMX3 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC25.14■■□□□ 1.61
COMMD3-BMI1R4GMX3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COMMD3-BMI1R4GMX3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COMMD3-BMI1R4GMX3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
COMMD3-BMI1R4GMX3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
COMMD3-BMI1R4GMX3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COMMD3-BMI1R4GMX3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COMMD3-BMI1R4GMX3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COMMD3-BMI1R4GMX3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COMMD3-BMI1R4GMX3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COMMD3-BMI1R4GMX3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.11■■□□□ 1.61
COMMD3-BMI1R4GMX3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.1■■□□□ 1.61
COMMD3-BMI1R4GMX3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COMMD3-BMI1R4GMX3 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COMMD3-BMI1R4GMX3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COMMD3-BMI1R4GMX3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.09■■□□□ 1.61
COMMD3-BMI1R4GMX3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
COMMD3-BMI1R4GMX3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COMMD3-BMI1R4GMX3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.08■■□□□ 1.61
COMMD3-BMI1R4GMX3 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC25.08■■□□□ 1.61
COMMD3-BMI1R4GMX3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.07■■□□□ 1.6
COMMD3-BMI1R4GMX3 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.07■■□□□ 1.6
COMMD3-BMI1R4GMX3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
COMMD3-BMI1R4GMX3 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COMMD3-BMI1R4GMX3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COMMD3-BMI1R4GMX3 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COMMD3-BMI1R4GMX3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
COMMD3-BMI1R4GMX3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
COMMD3-BMI1R4GMX3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
COMMD3-BMI1R4GMX3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
COMMD3-BMI1R4GMX3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.04■■□□□ 1.6
COMMD3-BMI1R4GMX3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.03■■□□□ 1.6
COMMD3-BMI1R4GMX3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
COMMD3-BMI1R4GMX3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COMMD3-BMI1R4GMX3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
COMMD3-BMI1R4GMX3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.02■■□□□ 1.6
COMMD3-BMI1R4GMX3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
COMMD3-BMI1R4GMX3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
COMMD3-BMI1R4GMX3 AC142086.6-201ENST00000621154 1765 ntBASIC25■■□□□ 1.59
COMMD3-BMI1R4GMX3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
COMMD3-BMI1R4GMX3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25■■□□□ 1.59
COMMD3-BMI1R4GMX3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COMMD3-BMI1R4GMX3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
COMMD3-BMI1R4GMX3 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC24.98■■□□□ 1.59
COMMD3-BMI1R4GMX3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.98■■□□□ 1.59
COMMD3-BMI1R4GMX3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
COMMD3-BMI1R4GMX3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COMMD3-BMI1R4GMX3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
COMMD3-BMI1R4GMX3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COMMD3-BMI1R4GMX3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.97■■□□□ 1.59
COMMD3-BMI1R4GMX3 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COMMD3-BMI1R4GMX3 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
COMMD3-BMI1R4GMX3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
COMMD3-BMI1R4GMX3 AC006077.2-201ENST00000623591 457 ntBASIC24.96■■□□□ 1.59
COMMD3-BMI1R4GMX3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
COMMD3-BMI1R4GMX3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COMMD3-BMI1R4GMX3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.93■■□□□ 1.58
COMMD3-BMI1R4GMX3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COMMD3-BMI1R4GMX3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COMMD3-BMI1R4GMX3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
COMMD3-BMI1R4GMX3 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC24.92■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms