Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SEC61A2Q9H9S3 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SEC61A2Q9H9S3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SEC61A2Q9H9S3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC24.18■■□□□ 1.46
SEC61A2Q9H9S3 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SEC61A2Q9H9S3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
SEC61A2Q9H9S3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC24.17■■□□□ 1.46
SEC61A2Q9H9S3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC24.16■■□□□ 1.46
SEC61A2Q9H9S3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
SEC61A2Q9H9S3 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
SEC61A2Q9H9S3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SEC61A2Q9H9S3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SEC61A2Q9H9S3 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC24.13■■□□□ 1.45
SEC61A2Q9H9S3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
SEC61A2Q9H9S3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
SEC61A2Q9H9S3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SEC61A2Q9H9S3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
SEC61A2Q9H9S3 SETD8P1-201ENST00000623146 1180 ntBASIC24.12■■□□□ 1.45
SEC61A2Q9H9S3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SEC61A2Q9H9S3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC24.09■■□□□ 1.45
SEC61A2Q9H9S3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SEC61A2Q9H9S3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
SEC61A2Q9H9S3 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
SEC61A2Q9H9S3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC24.06■■□□□ 1.44
SEC61A2Q9H9S3 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
SEC61A2Q9H9S3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
SEC61A2Q9H9S3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC24.03■■□□□ 1.44
SEC61A2Q9H9S3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.03■■□□□ 1.44
SEC61A2Q9H9S3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.03■■□□□ 1.44
SEC61A2Q9H9S3 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SEC61A2Q9H9S3 AC136428.2-201ENST00000563187 214 ntBASIC24.02■■□□□ 1.44
SEC61A2Q9H9S3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
SEC61A2Q9H9S3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.02■■□□□ 1.44
SEC61A2Q9H9S3 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
SEC61A2Q9H9S3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
SEC61A2Q9H9S3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
SEC61A2Q9H9S3 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SEC61A2Q9H9S3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
SEC61A2Q9H9S3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC24■■□□□ 1.43
SEC61A2Q9H9S3 AC097358.2-201ENST00000607541 1159 ntBASIC24■■□□□ 1.43
SEC61A2Q9H9S3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SEC61A2Q9H9S3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SEC61A2Q9H9S3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC23.98■■□□□ 1.43
SEC61A2Q9H9S3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
SEC61A2Q9H9S3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SEC61A2Q9H9S3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SEC61A2Q9H9S3 AL133380.1-201ENST00000506013 324 ntBASIC23.96■■□□□ 1.43
SEC61A2Q9H9S3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC23.96■■□□□ 1.43
SEC61A2Q9H9S3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
SEC61A2Q9H9S3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC23.95■■□□□ 1.42
SEC61A2Q9H9S3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC23.95■■□□□ 1.42
SEC61A2Q9H9S3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.95■■□□□ 1.42
SEC61A2Q9H9S3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SEC61A2Q9H9S3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
SEC61A2Q9H9S3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SEC61A2Q9H9S3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC23.92■■□□□ 1.42
SEC61A2Q9H9S3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.92■■□□□ 1.42
SEC61A2Q9H9S3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SEC61A2Q9H9S3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SEC61A2Q9H9S3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC23.9■■□□□ 1.42
SEC61A2Q9H9S3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC23.9■■□□□ 1.42
SEC61A2Q9H9S3 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SEC61A2Q9H9S3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.88■■□□□ 1.41
SEC61A2Q9H9S3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.87■■□□□ 1.41
SEC61A2Q9H9S3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
SEC61A2Q9H9S3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC23.84■■□□□ 1.41
SEC61A2Q9H9S3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SEC61A2Q9H9S3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SEC61A2Q9H9S3 AL161658.1-201ENST00000623641 1967 ntBASIC23.82■■□□□ 1.4
SEC61A2Q9H9S3 CAHM-201ENST00000604200 896 ntBASIC23.82■■□□□ 1.4
SEC61A2Q9H9S3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SEC61A2Q9H9S3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SEC61A2Q9H9S3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC23.81■■□□□ 1.4
SEC61A2Q9H9S3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
SEC61A2Q9H9S3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SEC61A2Q9H9S3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SEC61A2Q9H9S3 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SEC61A2Q9H9S3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SEC61A2Q9H9S3 SUZ12P1-203ENST00000578195 985 ntBASIC23.79■■□□□ 1.4
SEC61A2Q9H9S3 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SEC61A2Q9H9S3 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
SEC61A2Q9H9S3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC23.77■■□□□ 1.4
SEC61A2Q9H9S3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SEC61A2Q9H9S3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
SEC61A2Q9H9S3 WASH5P-204ENST00000632292 975 ntBASIC23.77■■□□□ 1.4
SEC61A2Q9H9S3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SEC61A2Q9H9S3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SEC61A2Q9H9S3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC23.76■■□□□ 1.39
SEC61A2Q9H9S3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SEC61A2Q9H9S3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
SEC61A2Q9H9S3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SEC61A2Q9H9S3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
SEC61A2Q9H9S3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.74■■□□□ 1.39
SEC61A2Q9H9S3 AL391121.1-201ENST00000607967 1349 ntBASIC23.74■■□□□ 1.39
SEC61A2Q9H9S3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SEC61A2Q9H9S3 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.73■■□□□ 1.39
SEC61A2Q9H9S3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.72■■□□□ 1.39
SEC61A2Q9H9S3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SEC61A2Q9H9S3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC23.72■■□□□ 1.39
SEC61A2Q9H9S3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms