Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.64■■□□□ 1.54
COL12A1Q99715 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
COL12A1Q99715 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC24.64■■□□□ 1.53
COL12A1Q99715 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL12A1Q99715 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.63■■□□□ 1.53
COL12A1Q99715 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL12A1Q99715 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC24.62■■□□□ 1.53
COL12A1Q99715 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL12A1Q99715 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL12A1Q99715 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC24.6■■□□□ 1.53
COL12A1Q99715 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.6■■□□□ 1.53
COL12A1Q99715 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL12A1Q99715 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
COL12A1Q99715 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL12A1Q99715 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC24.59■■□□□ 1.53
COL12A1Q99715 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
COL12A1Q99715 CR559946.2-201ENST00000623684 991 ntBASIC24.58■■□□□ 1.52
COL12A1Q99715 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
COL12A1Q99715 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
COL12A1Q99715 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
COL12A1Q99715 DENR-202ENST00000455982 1052 ntTSL 5 BASIC24.55■■□□□ 1.52
COL12A1Q99715 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC24.52■■□□□ 1.52
COL12A1Q99715 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL12A1Q99715 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL12A1Q99715 DUX4L29-201ENST00000425409 679 ntBASIC24.52■■□□□ 1.52
COL12A1Q99715 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.52■■□□□ 1.52
COL12A1Q99715 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL12A1Q99715 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
COL12A1Q99715 ILK-212ENST00000532063 1617 ntTSL 2 BASIC24.51■■□□□ 1.51
COL12A1Q99715 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
COL12A1Q99715 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC24.5■■□□□ 1.51
COL12A1Q99715 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
COL12A1Q99715 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.5■■□□□ 1.51
COL12A1Q99715 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
COL12A1Q99715 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC24.49■■□□□ 1.51
COL12A1Q99715 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
COL12A1Q99715 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
COL12A1Q99715 RARRES2P2-201ENST00000394842 485 ntBASIC24.48■■□□□ 1.51
COL12A1Q99715 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
COL12A1Q99715 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
COL12A1Q99715 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.48■■□□□ 1.51
COL12A1Q99715 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
COL12A1Q99715 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.45■■□□□ 1.5
COL12A1Q99715 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.45■■□□□ 1.5
COL12A1Q99715 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL12A1Q99715 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
COL12A1Q99715 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL12A1Q99715 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.42■■□□□ 1.5
COL12A1Q99715 AC021231.2-201ENST00000594613 730 ntBASIC24.42■■□□□ 1.5
COL12A1Q99715 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL12A1Q99715 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.41■■□□□ 1.5
COL12A1Q99715 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL12A1Q99715 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL12A1Q99715 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL12A1Q99715 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
COL12A1Q99715 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL12A1Q99715 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.33■■□□□ 1.49
COL12A1Q99715 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.33■■□□□ 1.49
COL12A1Q99715 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
COL12A1Q99715 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
COL12A1Q99715 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.32■■□□□ 1.48
COL12A1Q99715 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL12A1Q99715 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
COL12A1Q99715 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL12A1Q99715 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
COL12A1Q99715 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL12A1Q99715 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24.29■■□□□ 1.48
COL12A1Q99715 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL12A1Q99715 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL12A1Q99715 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
COL12A1Q99715 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC24.28■■□□□ 1.48
COL12A1Q99715 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL12A1Q99715 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.26■■□□□ 1.47
COL12A1Q99715 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
COL12A1Q99715 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.26■■□□□ 1.47
COL12A1Q99715 ABHD17AP5-201ENST00000580133 923 ntBASIC24.24■■□□□ 1.47
COL12A1Q99715 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
COL12A1Q99715 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
COL12A1Q99715 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
COL12A1Q99715 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC24.24■■□□□ 1.47
COL12A1Q99715 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.24■■□□□ 1.47
COL12A1Q99715 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
COL12A1Q99715 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC24.22■■□□□ 1.47
COL12A1Q99715 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC24.21■■□□□ 1.47
COL12A1Q99715 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
COL12A1Q99715 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC24.2■■□□□ 1.46
COL12A1Q99715 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
COL12A1Q99715 LINC01971-201ENST00000617888 1048 ntBASIC24.17■■□□□ 1.46
COL12A1Q99715 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.16■■□□□ 1.46
COL12A1Q99715 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
COL12A1Q99715 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC24.15■■□□□ 1.46
COL12A1Q99715 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC24.13■■□□□ 1.45
COL12A1Q99715 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
COL12A1Q99715 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
COL12A1Q99715 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
COL12A1Q99715 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
COL12A1Q99715 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
COL12A1Q99715 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
COL12A1Q99715 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL12A1Q99715 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms