Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC19.05■□□□□ 0.64
ALMS1Q8TCU4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ALMS1Q8TCU4 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ALMS1Q8TCU4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
ALMS1Q8TCU4 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
ALMS1Q8TCU4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC19■□□□□ 0.63
ALMS1Q8TCU4 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ALMS1Q8TCU4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ALMS1Q8TCU4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC18.99■□□□□ 0.63
ALMS1Q8TCU4 MIR639-201ENST00000384974 98 ntBASIC18.99■□□□□ 0.63
ALMS1Q8TCU4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC18.99■□□□□ 0.63
ALMS1Q8TCU4 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ALMS1Q8TCU4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
ALMS1Q8TCU4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
ALMS1Q8TCU4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ALMS1Q8TCU4 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ALMS1Q8TCU4 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC18.97■□□□□ 0.63
ALMS1Q8TCU4 AC021231.2-201ENST00000594613 730 ntBASIC18.97■□□□□ 0.63
ALMS1Q8TCU4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC18.96■□□□□ 0.63
ALMS1Q8TCU4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC18.96■□□□□ 0.63
ALMS1Q8TCU4 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ALMS1Q8TCU4 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ALMS1Q8TCU4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ALMS1Q8TCU4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
ALMS1Q8TCU4 CR559946.2-201ENST00000623684 991 ntBASIC18.95■□□□□ 0.62
ALMS1Q8TCU4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.94■□□□□ 0.62
ALMS1Q8TCU4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ALMS1Q8TCU4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ALMS1Q8TCU4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ALMS1Q8TCU4 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC18.93■□□□□ 0.62
ALMS1Q8TCU4 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
ALMS1Q8TCU4 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ALMS1Q8TCU4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.9■□□□□ 0.62
ALMS1Q8TCU4 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC18.9■□□□□ 0.62
ALMS1Q8TCU4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC18.9■□□□□ 0.62
ALMS1Q8TCU4 MIR3648-2-201ENST00000581792 180 ntBASIC18.89■□□□□ 0.61
ALMS1Q8TCU4 MIR3648-1-201ENST00000615959 180 ntBASIC18.89■□□□□ 0.61
ALMS1Q8TCU4 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC18.89■□□□□ 0.61
ALMS1Q8TCU4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC18.87■□□□□ 0.61
ALMS1Q8TCU4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC18.87■□□□□ 0.61
ALMS1Q8TCU4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ALMS1Q8TCU4 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ALMS1Q8TCU4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ALMS1Q8TCU4 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC18.85■□□□□ 0.61
ALMS1Q8TCU4 AC016575.1-201ENST00000607026 382 ntBASIC18.85■□□□□ 0.61
ALMS1Q8TCU4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ALMS1Q8TCU4 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ALMS1Q8TCU4 WASH5P-204ENST00000632292 975 ntBASIC18.84■□□□□ 0.61
ALMS1Q8TCU4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
ALMS1Q8TCU4 BRD4-212ENST00000630599 726 ntTSL 2 BASIC18.83■□□□□ 0.61
ALMS1Q8TCU4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
ALMS1Q8TCU4 DUX4L29-201ENST00000425409 679 ntBASIC18.83■□□□□ 0.6
ALMS1Q8TCU4 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC18.83■□□□□ 0.6
ALMS1Q8TCU4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC18.81■□□□□ 0.6
ALMS1Q8TCU4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ALMS1Q8TCU4 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ALMS1Q8TCU4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC18.8■□□□□ 0.6
ALMS1Q8TCU4 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ALMS1Q8TCU4 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ALMS1Q8TCU4 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ALMS1Q8TCU4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ALMS1Q8TCU4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC18.78■□□□□ 0.6
ALMS1Q8TCU4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ALMS1Q8TCU4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC18.78■□□□□ 0.6
ALMS1Q8TCU4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
ALMS1Q8TCU4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
ALMS1Q8TCU4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC18.77■□□□□ 0.6
ALMS1Q8TCU4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ALMS1Q8TCU4 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
ALMS1Q8TCU4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
ALMS1Q8TCU4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC18.76■□□□□ 0.59
ALMS1Q8TCU4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ALMS1Q8TCU4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC18.76■□□□□ 0.59
ALMS1Q8TCU4 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ALMS1Q8TCU4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ALMS1Q8TCU4 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ALMS1Q8TCU4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ALMS1Q8TCU4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ALMS1Q8TCU4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC18.74■□□□□ 0.59
ALMS1Q8TCU4 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC18.74■□□□□ 0.59
ALMS1Q8TCU4 ABHD17AP3-201ENST00000503096 1137 ntBASIC18.73■□□□□ 0.59
ALMS1Q8TCU4 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ALMS1Q8TCU4 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ALMS1Q8TCU4 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ALMS1Q8TCU4 LINC01971-201ENST00000617888 1048 ntBASIC18.71■□□□□ 0.59
ALMS1Q8TCU4 MIR6090-201ENST00000622481 60 ntBASIC18.71■□□□□ 0.59
ALMS1Q8TCU4 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ALMS1Q8TCU4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
ALMS1Q8TCU4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
ALMS1Q8TCU4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC18.7■□□□□ 0.58
ALMS1Q8TCU4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ALMS1Q8TCU4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18.69■□□□□ 0.58
ALMS1Q8TCU4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ALMS1Q8TCU4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ALMS1Q8TCU4 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ALMS1Q8TCU4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC18.66■□□□□ 0.58
ALMS1Q8TCU4 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ALMS1Q8TCU4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ALMS1Q8TCU4 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC18.66■□□□□ 0.58
ALMS1Q8TCU4 DUX4L11-201ENST00000611504 1267 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms