Protein–RNA interactions for Protein: Q495X7

TRIM60, Tripartite motif-containing protein 60, humanhuman

Predictions only

Length 471 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM60Q495X7 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.66■■■□□ 2.5
TRIM60Q495X7 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.64■■■□□ 2.5
TRIM60Q495X7 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.62■■■□□ 2.49
TRIM60Q495X7 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
TRIM60Q495X7 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
TRIM60Q495X7 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.61■■■□□ 2.49
TRIM60Q495X7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.6■■■□□ 2.49
TRIM60Q495X7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
TRIM60Q495X7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
TRIM60Q495X7 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
TRIM60Q495X7 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.59■■■□□ 2.49
TRIM60Q495X7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.58■■■□□ 2.49
TRIM60Q495X7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
TRIM60Q495X7 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
TRIM60Q495X7 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.58■■■□□ 2.49
TRIM60Q495X7 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.58■■■□□ 2.49
TRIM60Q495X7 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
TRIM60Q495X7 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
TRIM60Q495X7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
TRIM60Q495X7 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.52■■■□□ 2.48
TRIM60Q495X7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
TRIM60Q495X7 WASH5P-204ENST00000632292 975 ntBASIC30.51■■■□□ 2.47
TRIM60Q495X7 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
TRIM60Q495X7 DUX4L29-201ENST00000425409 679 ntBASIC30.5■■■□□ 2.47
TRIM60Q495X7 MIR4449-201ENST00000578365 66 ntBASIC30.5■■■□□ 2.47
TRIM60Q495X7 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
TRIM60Q495X7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
TRIM60Q495X7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
TRIM60Q495X7 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
TRIM60Q495X7 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
TRIM60Q495X7 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.43■■■□□ 2.46
TRIM60Q495X7 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
TRIM60Q495X7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
TRIM60Q495X7 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
TRIM60Q495X7 MIR639-201ENST00000384974 98 ntBASIC30.41■■■□□ 2.46
TRIM60Q495X7 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
TRIM60Q495X7 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
TRIM60Q495X7 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.39■■■□□ 2.46
TRIM60Q495X7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.39■■■□□ 2.46
TRIM60Q495X7 AC021231.2-201ENST00000594613 730 ntBASIC30.38■■■□□ 2.45
TRIM60Q495X7 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
TRIM60Q495X7 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
TRIM60Q495X7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.36■■■□□ 2.45
TRIM60Q495X7 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.36■■■□□ 2.45
TRIM60Q495X7 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
TRIM60Q495X7 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
TRIM60Q495X7 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
TRIM60Q495X7 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
TRIM60Q495X7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
TRIM60Q495X7 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.31■■■□□ 2.44
TRIM60Q495X7 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
TRIM60Q495X7 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
TRIM60Q495X7 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
TRIM60Q495X7 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
TRIM60Q495X7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
TRIM60Q495X7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.26■■■□□ 2.43
TRIM60Q495X7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.26■■■□□ 2.43
TRIM60Q495X7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.26■■■□□ 2.43
TRIM60Q495X7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
TRIM60Q495X7 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
TRIM60Q495X7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.24■■■□□ 2.43
TRIM60Q495X7 AC016575.1-201ENST00000607026 382 ntBASIC30.24■■■□□ 2.43
TRIM60Q495X7 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
TRIM60Q495X7 MIR3648-2-201ENST00000581792 180 ntBASIC30.23■■■□□ 2.43
TRIM60Q495X7 HSD17B1P1-201ENST00000590052 955 ntBASIC30.23■■■□□ 2.43
TRIM60Q495X7 MIR3648-1-201ENST00000615959 180 ntBASIC30.23■■■□□ 2.43
TRIM60Q495X7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
TRIM60Q495X7 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.22■■■□□ 2.43
TRIM60Q495X7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
TRIM60Q495X7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.22■■■□□ 2.43
TRIM60Q495X7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.22■■■□□ 2.43
TRIM60Q495X7 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
TRIM60Q495X7 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.21■■■□□ 2.43
TRIM60Q495X7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
TRIM60Q495X7 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
TRIM60Q495X7 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
TRIM60Q495X7 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
TRIM60Q495X7 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
TRIM60Q495X7 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.16■■■□□ 2.42
TRIM60Q495X7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM60Q495X7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.14■■■□□ 2.42
TRIM60Q495X7 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
TRIM60Q495X7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.13■■■□□ 2.41
TRIM60Q495X7 MIR6090-201ENST00000622481 60 ntBASIC30.13■■■□□ 2.41
TRIM60Q495X7 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.13■■■□□ 2.41
TRIM60Q495X7 AC108673.1-201ENST00000510422 1159 ntBASIC30.09■■■□□ 2.41
TRIM60Q495X7 CR559946.2-201ENST00000623684 991 ntBASIC30.09■■■□□ 2.41
TRIM60Q495X7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.09■■■□□ 2.41
TRIM60Q495X7 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
TRIM60Q495X7 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
TRIM60Q495X7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
TRIM60Q495X7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.07■■■□□ 2.4
TRIM60Q495X7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.07■■■□□ 2.4
TRIM60Q495X7 DUX4L11-201ENST00000611504 1267 ntBASIC30.07■■■□□ 2.4
TRIM60Q495X7 DUX4L12-201ENST00000614593 1267 ntBASIC30.07■■■□□ 2.4
TRIM60Q495X7 DUX4L14-201ENST00000621227 1267 ntBASIC30.07■■■□□ 2.4
TRIM60Q495X7 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.06■■■□□ 2.4
TRIM60Q495X7 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
TRIM60Q495X7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
TRIM60Q495X7 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.05■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms